CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58481	Soybean	cytosol	95.8	96.28
VIT_10s0003g03500.t01	Wine grape	cytosol	79.01	80.6
Solyc02g070440.2.1	Tomato	cytosol	73.33	76.94
EES01499	Sorghum	cytosol	72.1	76.64
Os01t0757400-02	Rice	cytosol	72.84	76.42
PGSC0003DMT400054532	Potato	cytosol	73.09	76.29
CDX84641	Canola	cytosol	70.62	76.27
TraesCS3B01G305600.2	Wheat	cytosol	74.07	75.95
GSMUA_Achr7P25300_001	Banana	cytosol	76.3	75.92
HORVU3Hr1G072910.6	Barley	cytosol	70.12	75.53
TraesCS3A01G294400.1	Wheat	cytosol	70.37	75.4
CDX79566	Canola	cytosol	69.88	75.27
CDY17260	Canola	cytosol	70.86	74.93
TraesCS3A01G271900.1	Wheat	cytosol	73.83	74.75
Bra005414.1-P	Field mustard	cytosol	72.35	74.74
GSMUA_Achr10P...	Banana	cytosol	71.11	74.42
AT2G34560.2	Thale cress	cytosol	72.1	74.3
TraesCS3D01G271500.1	Wheat	cytosol	73.09	74.0
CDX84306	Canola	cytosol	70.37	73.83
TraesCS3B01G329000.2	Wheat	cytosol	70.37	73.64
OQU87315	Sorghum	cytosol	73.09	73.45
Os01t0673500-01	Rice	cytosol	73.58	72.68
Zm00001d043410_P002	Maize	cytosol	72.1	70.36
TraesCS3D01G294200.1	Wheat	plastid	70.37	64.33
HORVU3Hr1G061800.1	Barley	cytosol, plastid	73.09	63.66
Zm00001d011563_P019	Maize	mitochondrion	73.33	56.57
Bra022979.1-P	Field mustard	plastid	68.89	48.35
KRH23518	Soybean	cytosol	25.68	45.41
KRH08796	Soybean	cytosol	17.53	40.8
KRH26619	Soybean	nucleus	36.54	33.95
KRH25197	Soybean	cytosol	35.56	33.18
KRH30451	Soybean	cytosol	35.31	32.95
KRH22691	Soybean	cytosol	32.1	31.78
KRH09800	Soybean	cytosol	36.54	30.96
KRH00594	Soybean	cytosol, plastid	36.3	29.94
KRH40573	Soybean	cytosol, plastid	35.56	29.63
KRH47511	Soybean	cytosol	38.77	29.57
KRH15897	Soybean	endoplasmic reticulum	28.4	29.49
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	28.4	29.34
KRH44395	Soybean	cytosol	38.27	29.08
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	27.9	28.83
KRH08789	Soybean	cytosol	23.46	28.36
KRG94255	Soybean	nucleus	35.8	22.0
KRH57680	Soybean	nucleus	35.8	22.0
KRH57222	Soybean	cytosol	31.36	20.26
KRH38312	Soybean	endoplasmic reticulum	31.85	15.79
KRH08780	Soybean	extracellular, plasma membrane	31.85	15.79
KRH35220	Soybean	endoplasmic reticulum	29.88	14.96
KRH77598	Soybean	endoplasmic reticulum	30.37	14.66
KRH59989	Soybean	endoplasmic reticulum	30.37	14.64
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	29.63	14.63
KRH27876	Soybean	cytosol	30.12	14.54
KRH41256	Soybean	extracellular	30.37	14.42
KRH71559	Soybean	cytosol	33.33	12.21
KRH29161	Soybean	cytosol, mitochondrion	29.88	11.66
KRH24190	Soybean	mitochondrion	29.88	11.65
KRH71560	Soybean	nucleus	34.07	11.1
KRH63756	Soybean	cytosol, plastid	33.83	11.1
KRH31896	Soybean	nucleus	33.58	11.09
KRH54195	Soybean	plastid	33.83	11.07
KRH31895	Soybean	nucleus	33.83	10.99
KRH03951	Soybean	nucleus	31.6	10.46

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100813164	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	EMBL:ACUP02004799
InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_08G085500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
GO:GO:0016887	UniProt:I1KRH0	EnsemblPlants:KRH42362	ProteinID:KRH42362	ProteinID:KRH42362.1	InterPro:P-loop_NTPase
PFAM:PF00004	PANTHER:PTHR23074	PANTHER:PTHR23074:SF92	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002338843

Description

hypothetical protein

Coordinates

chr8:+:6441519..6448694

Molecular Weight (calculated)

45413.3 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.445

Length

405 amino acids

Sequence
(BLAST)

001: MADDPMPTRW SFQDFKLCYD AKFGRKKVAE NGDDAAGKAV SNGNGNSVTV AIVSNGNKRA SEMAVYEQFR SEGQNQIHTN GFVPTLTDER PQKSLLPPFE
101: SAEMRALAES LSRDIIRGSP DVKWESIKGL ENAKRLLKEA VVMPIKYPKY FTGLLSPWKG ILLFGPPGTG KTMLAKAVAT ECNTTFFNIS ASSVVSKWRG
201: DSEKLVKVLF ELARHHAPST IFLDEIDAII SQRGEARSEH EASRRLKTEL LIQMDGLTKT DELVFVLAAT NLPWELDAAM LRRLEKRILV PLPEPVARRA
301: MFEELLPQQP GEESIPYDIL EDKTEGYSGS DIRLLCKETA MQPLRRLMSQ LEQNQDVVPE EELPKVGPIR SEDIETALRN TRPSAHLHAH KYDKFNADYG
401: SQILQ

Best Arabidopsis Sequence Match ( AT2G34560.2 )
(BLAST)

001: MATDEPSQTR WSFLEFKTFY DAKFGRKKLP EEDVSNKDQP EDGSSNGNNG DVNNNSSPVT NQDGNTALAN GNVIREKPKK SMFPPFESAE TRTLAESLSR
101: DIIRGNPNIK WESIKGLENA KKLLKEAVVM PIKYPTYFNG LLTPWKGILL FGPPGTGKTM LAKAVATECN TTFFNISASS VVSKWRGDSE KLIRVLFDLA
201: RHHAPSTIFL DEIDAIISQR GGEGRSEHEA SRRLKTELLI QMDGLQKTNE LVFVLAATNL PWELDAAMLR RLEKRILVPL PDPEARRGMF EMLIPSQPGD
301: EPLPHDVLVE KSEGYSGSDI RILCKEAAMQ PLRRTLAILE DREDVVPEDE LPKIGPILPE DIDRALSNTR PSAHLHAHLY DKFNDDYGSQ ILK

Arabidopsis Description

AT2G34560 protein [Source:UniProtKB/TrEMBL;Acc:B9DGC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.