CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41256	Soybean	extracellular	94.05	92.61
KRH08796	Soybean	cytosol	17.74	85.63
KRH27876	Soybean	cytosol	79.76	79.86
KRH77598	Soybean	endoplasmic reticulum	79.64	79.74
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	75.0	75.36
AT1G64110.2	Thale cress	cytosol	72.86	73.82
CDY08360	Canola	endoplasmic reticulum	72.98	73.77
Bra027756.1-P	Field mustard	endoplasmic reticulum	72.74	73.53
CDY38192	Canola	plasma membrane	72.5	73.29
Solyc08g081740.2.1	Tomato	unclear	70.6	70.93
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	70.24	70.74
KRH38312	Soybean	endoplasmic reticulum	67.98	69.89
KRH08789	Soybean	cytosol	27.74	69.55
KRH08780	Soybean	extracellular, plasma membrane	67.38	69.28
EES00021	Sorghum	endoplasmic reticulum	68.1	67.53
Os01t0226400-01	Rice	plasma membrane	67.38	67.38
Zm00001d008983_P001	Maize	vacuole	67.74	67.26
Zm00001d039315_P003	Maize	vacuole	67.14	67.06
TraesCS3B01G178200.1	Wheat	cytosol, vacuole	65.95	65.95
TraesCS3D01G159200.1	Wheat	cytosol, vacuole	65.6	65.91
TraesCS3A01G151300.2	Wheat	cytosol, vacuole	65.83	65.83
HORVU3Hr1G030770.20	Barley	cytosol, vacuole	65.83	65.76
KRH35220	Soybean	endoplasmic reticulum	59.29	61.56
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	59.76	61.22
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	19.88	42.6
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	19.76	42.35
KRH57222	Soybean	cytosol	31.55	42.26
KRH15897	Soybean	endoplasmic reticulum	19.29	41.54
KRH23518	Soybean	cytosol	9.76	35.81
KRH58481	Soybean	cytosol	14.76	30.77
KRH42362	Soybean	cytosol, endoplasmic reticulum	14.64	30.37
KRH71559	Soybean	cytosol	38.45	29.2
KRH26619	Soybean	nucleus	14.88	28.67
KRH40573	Soybean	cytosol, plastid	16.31	28.19
KRH25197	Soybean	cytosol	14.52	28.11
KRH30451	Soybean	cytosol	14.52	28.11
KRH00594	Soybean	cytosol, plastid	16.43	28.11
KRH09800	Soybean	cytosol	15.83	27.82
KRH03951	Soybean	nucleus	38.93	26.72
KRH24190	Soybean	mitochondrion	32.98	26.66
KRH22691	Soybean	cytosol	12.98	26.65
KRH31896	Soybean	nucleus	38.81	26.59
KRH29161	Soybean	cytosol, mitochondrion	32.86	26.59
KRH31895	Soybean	nucleus	38.93	26.22
KRH47511	Soybean	cytosol	16.43	25.99
KRH71560	Soybean	nucleus	38.45	25.99
KRH63756	Soybean	cytosol, plastid	37.98	25.85
KRH44395	Soybean	cytosol	16.31	25.7
KRH54195	Soybean	plastid	37.74	25.61
KRH57680	Soybean	nucleus	19.17	24.43
KRG94255	Soybean	nucleus	19.05	24.28

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0K5N2	InterPro:AAA+_ATPase	EMBL:ACUP02003347
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_05G212900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016787	GO:GO:0016887	EnsemblPlants:KRH59989	ProteinID:KRH59989	ProteinID:KRH59989.1	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF98	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0006EDE17E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:39435299..39443685

Molecular Weight (calculated)

93633.1 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.384

Length

840 amino acids

Sequence
(BLAST)

001: MEQKSILISA LGVGVGVGVG IGLASGQSVG NWGANTFSSN AITAEKMEQE MLRQVVDGRE SNVTFDKFPY YLSEQTRVLL TSAAYVHLKH AEVSKYTRNL
101: APASRTILLS GPAELYQQML AKALAHYFEA KLLLLDLTDF SLKSFKRSTS ETTLERLSDL FGSFSIFSQR EEPKVKMNRP SSGVDLQSMG AEVSLNPPTL
201: HRNASSSSNI SGLASQTNPT NSVPLKRTTS WSFDEKILIE SLHKVLAFVS KTYPIVLYLR DVDRLLYKSQ RIYNLFQKML KKLSGPILIL GSRVIDSGND
301: YEEVDEKLNS LFPYNIEIRP PEDESHLVSW KSQLEEDMKM IQVQDNKNHI MEVLAATDLD CDDLDSICVA DTMILSNYIE EIIVSAISYH LMKNKDTEYR
401: NGKLVISSNS LSHALNIFHK GKSSRRDASK LEDHAVKSEQ REEGTAMKPE VKSKNAAPVK KTEAEISTSV GKAGGEKSVP APKAPEVPLD NEFEKQIRPE
501: VIPANEIDVT FSDIGALDDT KESLQELVML PLRRPDLFTG GLLKPCRGIL LFGPPGTGKT MLAKAIAKEA GASFINVSMS TITSKWFGED EKNVRALFTL
601: AAKVSPTIIF LDEVDSMLGQ RTRVGEHEAM RKIKNEFMTH WDGLLTKQGE RILVLAATNR PFDLDEAIIR RFERRIMVEL PSVENREKIL RTLLAKEKVD
701: NELDFKELAT MTEGYTGSDL KNLCTTAAYR PVRELIQQER LKSLDKKQKA AKGQNKDVQE SQGGQSILGN TQDAIDGEEE VKQERVITLG PLNMQDFKEA
801: KNQVAASFAA EGAGMSEMKQ WNDLYGEGGS RKQQQLSYFL

Best Arabidopsis Sequence Match ( AT1G64110.4 )
(BLAST)

001: MDSKQMLLSA LGVGVGVGVG LGLASGQAVG KWAGGNSSSN NAVTADKMEK EILRQVVDGR ESKITFDEFP YYLSEQTRVL LTSAAYVHLK HFDASKYTRN
101: LSPASRAILL SGPAELYQQM LAKALAHFFD AKLLLLDVND FALKIQSKYG SGNTESSSFK RSPSESALEQ LSGLFSSFSI LPQREESKAG GTLRRQSSGV
201: DIKSSSMEGS SNPPKLRRNS SAAANISNLA SSSNQVSAPL KRSSSWSFDE KLLVQSLYKV LAYVSKANPI VLYLRDVENF LFRSQRTYNL FQKLLQKLSG
301: PVLILGSRIV DLSSEDAQEI DEKLSAVFPY NIDIRPPEDE THLVSWKSQL ERDMNMIQTQ DNRNHIMEVL SENDLICDDL ESISFEDTKV LSNYIEEIVV
401: SALSYHLMNN KDPEYRNGKL VISSISLSHG FSLFREGKAG GREKLKQKTK EESSKEVKAE SIKPETKTES VTTVSSKEEP EKEAKAEKVT PKAPEVAPDN
501: EFEKRIRPEV IPAEEINVTF KDIGALDEIK ESLQELVMLP LRRPDLFTGG LLKPCRGILL FGPPGTGKTM LAKAIAKEAG ASFINVSMST ITSKWFGEDE
601: KNVRALFTLA SKVSPTIIFV DEVDSMLGQR TRVGEHEAMR KIKNEFMSHW DGLMTKPGER ILVLAATNRP FDLDEAIIRR FERRIMVGLP AVENREKILR
701: TLLAKEKVDE NLDYKELAMM TEGYTGSDLK NLCTTAAYRP VRELIQQERI KDTEKKKQRE PTKAGEEDEG KEERVITLRP LNRQDFKEAK NQVAASFAAE
801: GAGMGELKQW NELYGEGGSR KKEQLTYFL

Arabidopsis Description

p-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5A3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.