CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31895	Soybean	nucleus	95.58	95.27
KRH71559	Soybean	cytosol	76.59	86.08
KRH31896	Soybean	nucleus	84.39	85.56
Os11t0661400-01	Rice	cytosol	16.57	85.48
Zm00001d029385_P001	Maize	cytosol	12.31	80.1
KRH57222	Soybean	cytosol	38.21	75.76
Zm00001d049686_P001	Maize	plastid	13.68	71.13
Solyc06g084530.2.1	Tomato	extracellular, nucleus	69.51	69.06
VIT_07s0005g00200.t01	Wine grape	plastid	70.64	68.22
Solyc09g074950.2.1	Tomato	plastid	67.58	67.91
TraesCS1B01G120800.1	Wheat	cytosol	13.44	66.01
CDY32485	Canola	plastid	58.0	65.43
CDX91317	Canola	plastid	55.67	65.41
GSMUA_Achr11P...	Banana	cytosol	37.01	65.25
CDX97266	Canola	plastid	58.89	64.72
GSMUA_Achr8P33760_001	Banana	cytosol	57.44	64.67
CDX90936	Canola	plastid	56.8	64.53
CDX89933	Canola	plastid	59.13	63.58
CDY18129	Canola	cytosol, plastid	61.79	63.26
CDY22053	Canola	plastid	62.43	63.14
Bra018548.1-P	Field mustard	plastid	61.87	63.08
Bra000878.1-P	Field mustard	plastid	63.23	62.78
GSMUA_Achr3P00740_001	Banana	mitochondrion	57.36	62.16
CDY50381	Canola	plastid	59.94	62.03
AT1G02890.1	Thale cress	plastid	62.03	61.88
AT4G02480.1	Thale cress	plastid	62.83	61.74
Bra032579.1-P	Field mustard	plastid	56.48	61.2
CDY18018	Canola	plastid	59.94	61.07
Bra036265.1-P	Field mustard	plastid	63.31	61.01
GSMUA_Achr11P...	Banana	cytosol	43.93	60.73
HORVU7Hr1G026880.14	Barley	cytosol	22.61	60.43
Os03t0344700-01	Rice	cytosol	37.57	60.26
GSMUA_Achr8P10090_001	Banana	cytosol	52.61	60.17
KRH08796	Soybean	cytosol	8.37	59.77
KXG29076	Sorghum	plastid	57.2	57.57
KRH54195	Soybean	plastid	56.32	56.54
KRH63756	Soybean	cytosol, plastid	56.07	56.48
KRH03951	Soybean	nucleus	55.35	56.21
Zm00001d007698_P002	Maize	plastid	57.2	56.16
TraesCS4A01G169300.15	Wheat	plastid	55.43	55.88
Zm00001d048689_P004	Maize	plastid	56.23	55.74
TraesCS4D01G145100.12	Wheat	plastid	54.87	55.54
TraesCS4B01G126300.7	Wheat	nucleus	55.99	55.33
EES16128	Sorghum	cytosol, plastid	41.03	54.72
HORVU4Hr1G033300.1	Barley	cytosol	56.15	53.9
TraesCS7B01G028300.1	Wheat	cytosol	34.11	53.74
HORVU2Hr1G019730.5	Barley	cytosol, plastid	45.37	53.71
Zm00001d007139_P007	Maize	cytosol, plastid	45.29	53.26
Os07t0672500-02	Rice	cytosol, plastid	46.18	53.1
TraesCS2A01G113900.1	Wheat	cytosol	46.66	52.68
TraesCS2B01G132900.3	Wheat	cytosol, plastid	46.34	52.36
OQU90457	Sorghum	cytosol, plastid	45.86	52.1
Bra033356.1-P	Field mustard	cytosol, plastid	61.87	51.58
TraesCS2D01G114500.1	Wheat	cytosol, plastid	46.74	51.23
TraesCS4A01G142800.3	Wheat	cytosol	44.89	50.77
TraesCS4B01G155600.1	Wheat	cytosol	44.81	50.64
TraesCS4D01G168600.1	Wheat	cytosol	45.05	50.59
EER92288	Sorghum	cytosol	44.17	49.46
TraesCS7D01G127200.1	Wheat	cytosol	38.7	48.68
Zm00001d047494_P007	Maize	cytosol	43.2	48.55
Zm00001d029120_P004	Maize	cytosol	43.85	48.4
HORVU4Hr1G046420.6	Barley	cytosol, plastid	44.73	48.14
TraesCS7A01G128400.2	Wheat	cytosol, plastid	39.26	48.13
OQU79278	Sorghum	cytosol, plastid	35.56	47.94
KRH08789	Soybean	cytosol	12.55	46.57
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	14.08	44.64
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	13.92	44.13
KRH15897	Soybean	endoplasmic reticulum	13.27	42.31
KRH08780	Soybean	extracellular, plasma membrane	27.27	41.49
KRH38312	Soybean	endoplasmic reticulum	27.03	41.13
KRH35220	Soybean	endoplasmic reticulum	26.07	40.05
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	26.23	39.76
KRH27876	Soybean	cytosol	26.79	39.69
KRH77598	Soybean	endoplasmic reticulum	26.55	39.33
KRH41256	Soybean	extracellular	26.55	38.69
KRH59989	Soybean	endoplasmic reticulum	25.99	38.45
KRH23518	Soybean	cytosol	7.08	38.43
KRH58481	Soybean	cytosol	11.26	34.74
KRH42362	Soybean	cytosol, endoplasmic reticulum	11.1	34.07
KRH24190	Soybean	mitochondrion	27.11	32.44
KRH29161	Soybean	cytosol, mitochondrion	27.03	32.37
KRH09800	Soybean	cytosol	11.18	29.08
KRH30451	Soybean	cytosol	10.14	29.03
KRH25197	Soybean	cytosol	10.06	28.8
KRH00594	Soybean	cytosol, plastid	11.26	28.51
KRH26619	Soybean	nucleus	9.98	28.44
KRH40573	Soybean	cytosol, plastid	11.02	28.19
KRH44395	Soybean	cytosol	12.07	28.14
KRH47511	Soybean	cytosol	11.99	28.06
KRH57680	Soybean	nucleus	14.32	27.01
KRG94255	Soybean	nucleus	14.32	27.01
KRH22691	Soybean	cytosol	8.53	25.92
CDX89934	Canola	cytosol	0.32	1.53

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100801477	Gene3D:2.60.200.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase
EMBL:ACUP02000904	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	InterPro:FHA_dom	EnsemblPlantsGene:GLYMA_02G155100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887
InterPro:IPR000253	UniProt:K7K8K0	EnsemblPlants:KRH71560	ProteinID:KRH71560	ProteinID:KRH71560.1	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF70	SMART:SM00382	InterPro:SMAD_FHA_dom_sf
SUPFAM:SSF49879	SUPFAM:SSF52540	UniParc:UPI0002955561	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:15882852..15895352

Molecular Weight (calculated)

134797.0 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.350

Length

1243 amino acids

Sequence
(BLAST)

0001: MVETRRSSSS SSKRSLSSPS PPNNTKRSKV SEDSSSTTVP SVAPVNESGT ANESAEPELR PSDLPDTASL KAVDGCDAMS PDRSPSAPVE GEALVSPQCQ
0101: GDTAEKLKGV PMAAAGGRSK KRPSKLSPKV AWGKLLSQCS QNPHVSMSDL IFTVGQGRNC NLWLKDPTVG NVLCKLSHIE RGGSSVALLE ITGGKGSIQV
0201: NGKTYRKNAR LILSGGDEVV FGSSGKHAYI FQQLTNNNIN PADIPSSVSI LEAQSAPING TQVEARSGDP SAVAGASILA SLSNLPKDLS LLSPPAKTGK
0301: NVQQNADISS LPSGNGDDMP DSEMKDATND VASEVFSADK TVNKNPNLDT AEVNINVDPD VGKVTAATYE LRPLLRMLAG SCPEVDLSCG ITKILEERRE
0401: LRELLKDVDT PTILASTRRQ AFKDSLQQRI LKSENIDVSF ETFPYYLSDT TKNVLIASTF IHLKCIGFGK YASDLPSVSP RILLSGPPGS EIYQETLCKA
0501: LAKHFGARLL IVDSLSLPGG ASSKEVDSAK ESSRPERPSS VCAKRSSQTT TLQHKKPASS VDAEIVGGST LSSQAMLKQE VSTASSKGTT LKEGDRVKFV
0601: GNFPSAVSSL PNYPSRGPSY GSRGKVLLAF EDNRSSKIGV RFDKSIPDGN DLGGLCEDDR GFFCSANHLL RVDGSGGDDA DKVAINDIFE VTSNQSKSGS
0701: LVLFIKDIEK AMVGNYEVLK NKFESLPPNV VVIGSHTLLD NRKEKTQPGG LLFTKFGSNQ TALLDLAFPD NFGRLHDRSK ETPKVMKQLG RLFPNKVTIQ
0801: LPQDEALLSD WKQQLERDIE TMKAQSNIVS VCTVLNRIGL DCPDLETLCI NDQTLTTESV EKIIGWAISY HFMHSSEASI KDSKLVISAK SINYGLNILQ
0901: GIQNENKNLK KSLKDVVTEN EFEKKLLADV IPPTDIGVTF DDIGALENVK DTLKELVMLP LQRPELFCKG QLTKPCKGIL LFGPPGTGKT MLAKAVATEA
1001: GANFINISMS SITSKWFGEG EKYVKAVFSL ASKIAPSVIF VDEVDSMLGR RENPSEHEAM RKMKNEFMVN WDGLRTKDKE RVLVLAATNR PFDLDEAVIR
1101: RLPRRLMVNL PDAPNREKIL SVILAKEDLA PDIDFEAIAN MTDGYSGSDL KNLCVTAAHC PIREILEKEK KERSLALSEN KPLPGLCSSG DIRPLKMDDF
1201: RYAHEQVCAS VSSESTNMNE LLQWNDLYGE GGSRKMRSLS YFM

Best Arabidopsis Sequence Match ( AT4G02480.1 )
(BLAST)

0001: MVETRRSSSA SKRFCASSSS PEASSSQRPN KRSKVKIDAA ASSLEPATAE PAGSSSASEV PIENQGPASD PGSESGEPEL GSSDPQAMDA EKPVVTTDVP
0101: VMENSPETDA NPEVEVLATP TVAGEAVADA DKSKAAKKRA LKAPWAKLLS QYSQNPHRVI RGPVFTVGRR GCDLSIRDQA MPSTLCELKQ SEHGGPSVAS
0201: LEILGNGVIV HVNGKCYQKS TCVHLRGGDE VIFSLNGKHA YIFQPVKDEN LAAPDRASSL SICEARGAPL KGVHVETRAG DVDGASDVDG ASILASLSKL
0301: RSFHLLPPIA KAGKRQQNPA VPVVPSSFND CISDTDMNDA DSNNDHAAVA SVEKIAAAST PGTANENLNV DGSGLDPFQE ADGGNVPAAG YEIRPIVHLL
0401: GESSSFDIRG SISRLLDERR EVKEFLREFD LSSTISTRRQ AFKDSLRGGV LNAQNIDISF ENFPYYLSAT TKGVLMISMY VHMNGGSKYA NFATDLTTAC
0501: PRILLSGPSG SEIYQEMLAK ALAKQFGAKL MIVDSLLLPG GSPAREAESS KEGSRRERLS MLAKRAVQAA QVLQHKKPTS SVDADITGGS TLSSQALPKQ
0601: EVSTATSKSY TFKAGDRVKF VGPSASAISS LQGQLRGPAI GSQGKVALAF EDNCASKIGI RFDRPVQDGN DLGGLCEEDH GFFCAASSLR LEGSSSDDAD
0701: KLAVNEIFEV ALSESEGGSL ILFLKDIEKS LVGNSDVYAT LKSKLETLPE NIVVIASQTQ LDSRKEKSHP GGFLFTKFGG NQTALLDLAF PDNFGKLHDR
0801: SKETPKSMKQ ITRLFPNKIA IQLPQEEALL SDWKEKLDRD TEILKVQANI TSILAVLAKN KLDCPDLGTL CIKDQTLPSE SVEKVVGWAF GHHLMICTEP
0901: IVKDNKLVIS AESISYGLQT LHDIQNENKS LKKSLKDVVT ENEFEKKLLS DVIPPSDIGV SFDDIGALEN VKETLKELVM LPLQRPELFD KGQLTKPTKG
1001: ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV IFVDEVDSML GRRENPGEHE AMRKMKNEFM VNWDGLRTKD
1101: RERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDATNRSK ILSVILAKEE IAPDVDLEAI ANMTDGYSGS DLKNLCVTAA HFPIREILEK EKKEKTAAQA
1201: ENRPTPPLYS CTDVRSLTMN DFKAAHDQVC ASVSSDSSNM NELQQWNELY GEGGSRKKTS LSYFM

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WM93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.