Factsheet for Solyc09g074950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0661400-01	Rice	cytosol	17.22	88.38
Zm00001d029385_P001	Maize	cytosol	12.45	80.63
Solyc06g084530.2.1	Tomato	extracellular, nucleus	81.24	80.34
Zm00001d049686_P001	Maize	plastid	13.9	71.97
KRH71559	Soybean	cytosol	61.44	68.72
KRH71560	Soybean	nucleus	67.91	67.58
GSMUA_Achr11P...	Banana	cytosol	38.48	67.52
VIT_07s0005g00200.t01	Wine grape	plastid	70.17	67.44
TraesCS1B01G120800.1	Wheat	cytosol	13.74	67.19
KRH31895	Soybean	nucleus	67.34	66.8
KRH31896	Soybean	nucleus	65.89	66.48
CDX90936	Canola	plastid	57.56	65.08
GSMUA_Achr8P33760_001	Banana	cytosol	58.04	65.04
CDX91317	Canola	plastid	55.62	65.03
CDY32485	Canola	plastid	57.72	64.79
CDX97266	Canola	plastid	58.93	64.46
CDY22053	Canola	plastid	62.89	63.3
Bra018548.1-P	Field mustard	plastid	62.25	63.17
CDX89933	Canola	plastid	58.93	63.06
Solyc06g071980.2.1	Tomato	cytosol	38.64	62.89
Bra000878.1-P	Field mustard	plastid	63.54	62.78
CDY18129	Canola	cytosol, plastid	61.6	62.77
GSMUA_Achr3P00740_001	Banana	mitochondrion	58.12	62.69
AT4G02480.1	Thale cress	plastid	63.78	62.37
AT1G02890.1	Thale cress	plastid	62.81	62.36
CDY50381	Canola	plastid	60.39	62.2
GSMUA_Achr11P...	Banana	cytosol	45.19	62.18
CDY18018	Canola	plastid	60.87	61.72
Os03t0344700-01	Rice	cytosol	38.4	61.29
Bra036265.1-P	Field mustard	plastid	63.54	60.93
Bra032579.1-P	Field mustard	plastid	56.27	60.68
GSMUA_Achr8P10090_001	Banana	cytosol	53.27	60.63
HORVU7Hr1G026880.14	Barley	cytosol	22.55	60.0
KXG29076	Sorghum	plastid	57.48	57.57
TraesCS4A01G169300.15	Wheat	plastid	56.99	57.18
TraesCS4D01G145100.12	Wheat	plastid	56.27	56.68
Solyc03g110900.2.1	Tomato	nucleus	54.73	56.65
Zm00001d048689_P004	Maize	plastid	57.24	56.46
TraesCS4B01G126300.7	Wheat	nucleus	57.32	56.36
Zm00001d007698_P002	Maize	plastid	57.15	55.85
TraesCS7B01G028300.1	Wheat	cytosol	35.0	54.88
HORVU4Hr1G033300.1	Barley	cytosol	56.99	54.44
EES16128	Sorghum	cytosol, plastid	40.99	54.4
HORVU2Hr1G019730.5	Barley	cytosol, plastid	45.27	53.33
Zm00001d007139_P007	Maize	cytosol, plastid	45.19	52.89
Os07t0672500-02	Rice	cytosol, plastid	46.08	52.73
TraesCS2A01G113900.1	Wheat	cytosol	46.24	51.95
OQU90457	Sorghum	cytosol, plastid	45.84	51.83
TraesCS2B01G132900.3	Wheat	cytosol, plastid	45.84	51.55
Solyc06g072000.1.1	Tomato	plastid	42.28	50.92
TraesCS4B01G155600.1	Wheat	cytosol	45.27	50.91
TraesCS4A01G142800.3	Wheat	cytosol	45.19	50.86
TraesCS4D01G168600.1	Wheat	cytosol	45.35	50.68
Bra033356.1-P	Field mustard	cytosol, plastid	61.03	50.64
TraesCS2D01G114500.1	Wheat	cytosol, plastid	46.08	50.26
EER92288	Sorghum	cytosol	44.87	50.0
TraesCS7D01G127200.1	Wheat	cytosol	39.85	49.9
TraesCS7A01G128400.2	Wheat	cytosol, plastid	40.58	49.51
Zm00001d029120_P004	Maize	cytosol	44.22	48.58
HORVU4Hr1G046420.6	Barley	cytosol, plastid	45.35	48.57
Zm00001d047494_P007	Maize	cytosol	43.25	48.37
OQU79278	Sorghum	cytosol, plastid	34.92	46.85
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	13.34	43.77
Solyc08g083020.2.1	Tomato	plastid	12.45	42.9
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	13.5	42.6
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	27.24	40.8
Solyc08g081740.2.1	Tomato	unclear	27.41	40.55
Solyc11g013570.1.1	Tomato	cytosol	8.73	35.64
Solyc02g070440.2.1	Tomato	cytosol	10.83	34.72
Solyc02g014350.2.1	Tomato	mitochondrion	25.87	32.1
Solyc01g094150.2.1	Tomato	nucleus	12.21	30.75
Solyc11g013700.1.1	Tomato	cytosol	9.54	29.8
Solyc11g007170.1.1	Tomato	cytosol	9.46	28.96
Solyc10g019190.1.1	Tomato	cytosol	8.25	28.73
Solyc06g066810.2.1	Tomato	cytosol	11.88	28.38
Solyc11g067230.1.1	Tomato	cytosol	9.78	28.01
Solyc11g067240.1.1	Tomato	plastid	9.78	28.01
Solyc11g013650.1.1	Tomato	cytosol	7.92	27.84
Solyc11g050800.1.1	Tomato	cytosol	7.03	27.62
Solyc11g050880.1.1	Tomato	cytosol	10.59	25.94
Solyc12g040520.1.1	Tomato	cytosol	11.08	25.8
Solyc02g094100.2.1	Tomato	nucleus	13.34	24.7
CDX89934	Canola	cytosol	0.32	1.53

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.60.200.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	InterPro:FHA_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016787	GO:GO:0016887	InterPro:IPR000253	UniProt:K4CV72	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF70	SMART:SM00382	InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g074950.2	EnsemblPlants:Solyc09g074950.2.1	UniParc:UPI000276B773	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:66745933..66760740

Molecular Weight (calculated)

134400.0 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.354

Length

1237 amino acids

Sequence
(BLAST)

0001: MVETRRSSSS SKRSLSPSSS SLQNNGKRSK GGVNDSGPES AEQEVRSADL VGASVLKSSD DAAATPAAAA APQKSMETEG ANEPLVSPMT LGDSAIDVDK
0101: SKSNGSALNR GKKRQLKSNG AAWGKLLSQC SQNPHLVMHR PTYTVGQSRE SDLWIGDSTV SKDLCNLKHT ETEKGVSITL LEITGKKGDV QVNGKVYPKN
0201: STVPLKGGDE VVFGSSGQHA YIFDNDLSAT SLAHPVSILE AHSGSIKGLH LEARSGDPST VAVASTLASL SNLRKDLSLL PPSSQNGKDG KQGSEVPILP
0301: SASGLSLTEK DDLDTDMKDA SDGNDEPGVL VDEKNDVISP GVENGNLNLD NVVLDSVDAE IGKVQPLLQV LAGSSASEFD LSGSISKIFE EQRNFRELLK
0401: DFDRPVSALT RRQTFKNALQ QGVVDFNTID VTFENFPYYL CENTKNVLIA STYIHLKCNG FAKFASDLPT VCPRILLSGP AGSEIYQETL AKALAKYFCA
0501: KLMIVDSLLL PGVSSSKDVE PVKVSSKPER ASVFAKRAAQ AAALHLNKKP ASSVEADITG GSILSSHAQP KQEASTASSK NYTFKKGDRV KYIGSLTSSF
0601: SPLQSPIRGP TYGYRGKVVL AFEENGSSKI GVRFDRSIPE GNDLGGLCDE DHGFFCAADL LRLDSSSNDE IDKLAINELF EVALKESKSG PLVLFIKDIE
0701: KSMVGNPEAY AAFKIKLEHL PENVVAIASH AQSDSRKEKS HPGGLLFTKF GSNQTALLDL AFPDNFGRLH DRSKETPKTM KQLTRLFPNK VTIQIPQDET
0801: LLSDWKQKLD RDMETMKSQS NIASIRNVLN RFKINCDDLE ILCIKDQALT NESVEKIIGW ALSHHLMHKS ESAMKETKLA ISSESIAYGL SMFQGIQGET
0901: KSLKKSLKDV VTENEFEKKL LGDVIPPSDI GVTFNDIGAL ETVKDTLKEL VMLPLQRPEL FCKGQLTKPC KGILLFGPPG TGKTMLAKAV ATEAGANFIN
1001: ISMSSITSKW FGEGEKYVKA VFTLASKIAP SVIFVDEVDS MLGRRENPGE HEAMRKMKNE FMVNWDGLRT KDKERVLVLA ATNRPFDLDE AVIRRLPRRL
1101: MVNLPDASNR EKILGVILAK EELAPNVDLE AIATMTDGYS GSDLKNLCVS AAHCPIREIL EKEKKEKTLA IAESRPSPAL HSSADIRPLN MDDFKYAHEQ
1201: VCASVSSESS NMNELLQWND LYGEGGSRKK TSLSYFM

Best Arabidopsis Sequence Match ( AT4G02480.1 )
(BLAST)

0001: MVETRRSSSA SKRFCASSSS PEASSSQRPN KRSKVKIDAA ASSLEPATAE PAGSSSASEV PIENQGPASD PGSESGEPEL GSSDPQAMDA EKPVVTTDVP
0101: VMENSPETDA NPEVEVLATP TVAGEAVADA DKSKAAKKRA LKAPWAKLLS QYSQNPHRVI RGPVFTVGRR GCDLSIRDQA MPSTLCELKQ SEHGGPSVAS
0201: LEILGNGVIV HVNGKCYQKS TCVHLRGGDE VIFSLNGKHA YIFQPVKDEN LAAPDRASSL SICEARGAPL KGVHVETRAG DVDGASDVDG ASILASLSKL
0301: RSFHLLPPIA KAGKRQQNPA VPVVPSSFND CISDTDMNDA DSNNDHAAVA SVEKIAAAST PGTANENLNV DGSGLDPFQE ADGGNVPAAG YEIRPIVHLL
0401: GESSSFDIRG SISRLLDERR EVKEFLREFD LSSTISTRRQ AFKDSLRGGV LNAQNIDISF ENFPYYLSAT TKGVLMISMY VHMNGGSKYA NFATDLTTAC
0501: PRILLSGPSG SEIYQEMLAK ALAKQFGAKL MIVDSLLLPG GSPAREAESS KEGSRRERLS MLAKRAVQAA QVLQHKKPTS SVDADITGGS TLSSQALPKQ
0601: EVSTATSKSY TFKAGDRVKF VGPSASAISS LQGQLRGPAI GSQGKVALAF EDNCASKIGI RFDRPVQDGN DLGGLCEEDH GFFCAASSLR LEGSSSDDAD
0701: KLAVNEIFEV ALSESEGGSL ILFLKDIEKS LVGNSDVYAT LKSKLETLPE NIVVIASQTQ LDSRKEKSHP GGFLFTKFGG NQTALLDLAF PDNFGKLHDR
0801: SKETPKSMKQ ITRLFPNKIA IQLPQEEALL SDWKEKLDRD TEILKVQANI TSILAVLAKN KLDCPDLGTL CIKDQTLPSE SVEKVVGWAF GHHLMICTEP
0901: IVKDNKLVIS AESISYGLQT LHDIQNENKS LKKSLKDVVT ENEFEKKLLS DVIPPSDIGV SFDDIGALEN VKETLKELVM LPLQRPELFD KGQLTKPTKG
1001: ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV IFVDEVDSML GRRENPGEHE AMRKMKNEFM VNWDGLRTKD
1101: RERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDATNRSK ILSVILAKEE IAPDVDLEAI ANMTDGYSGS DLKNLCVTAA HFPIREILEK EKKEKTAAQA
1201: ENRPTPPLYS CTDVRSLTMN DFKAAHDQVC ASVSSDSSNM NELQQWNELY GEGGSRKKTS LSYFM

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WM93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.