Factsheet for Solyc11g050880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g040520.1.1	Tomato	cytosol	91.49	87.01
Solyc10g019190.1.1	Tomato	cytosol	55.84	79.44
Solyc11g013570.1.1	Tomato	cytosol	46.53	77.56
Solyc11g050800.1.1	Tomato	cytosol	44.36	71.11
Solyc11g013700.1.1	Tomato	cytosol	55.25	70.45
Solyc11g013650.1.1	Tomato	cytosol	48.51	69.6
PGSC0003DMT400071442	Potato	cytosol	39.21	60.74
Solyc06g066810.2.1	Tomato	cytosol	46.14	44.98
Solyc02g070440.2.1	Tomato	cytosol	29.11	38.08
Solyc11g007170.1.1	Tomato	cytosol	28.12	35.15
Solyc11g067230.1.1	Tomato	cytosol	27.92	32.64
Solyc11g067240.1.1	Tomato	plastid	27.72	32.41
Solyc01g094150.2.1	Tomato	nucleus	26.73	27.49
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	18.22	24.4
Solyc08g083020.2.1	Tomato	plastid	17.03	23.96
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	18.02	23.21
Solyc02g094100.2.1	Tomato	nucleus	27.52	20.81
Solyc06g071980.2.1	Tomato	cytosol	23.96	15.92
Solyc08g081740.2.1	Tomato	unclear	23.96	14.47
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	22.97	14.04
Solyc06g072000.1.1	Tomato	plastid	24.36	11.98
Solyc02g014350.2.1	Tomato	mitochondrion	22.57	11.43
Solyc03g110900.2.1	Tomato	nucleus	26.14	11.05
Solyc06g084530.2.1	Tomato	extracellular, nucleus	26.34	10.63
Solyc09g074950.2.1	Tomato	plastid	25.94	10.59

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0051013	InterPro:IPR002048
UniProt:K4D8Q1	InterPro:KATNA1	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
ScanProsite:PS00674	PFscan:PS50222	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc11g050880.1	EnsemblPlants:Solyc11g050880.1.1	UniParc:UPI000276A912	InterPro:Vps4_C	SEG:seg	:

Description

Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:K4D8Q1]

Coordinates

chr11:+:16636587..16640848

Molecular Weight (calculated)

56235.4 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.376

Length

505 amino acids

Sequence
(BLAST)

001: MVGVDAAKSK EEKMKIIFDK FDVNKDSHLG ITELLGWIMA VEPTLSNDLQ RLPFLLQNTW GYAIRGILQQ QQRSLMLQSQ LQQQYQQQEQ HRSLMLQSQL
101: VQQQAQQCAS LATNTFSNNL RNTTQQVGGG ISSAGPVSNI GITAQQMGGV ISSVVQVNSY GNTKQQVGGN LNSAAEVNKN VNSAEQANAV KDVKSKVKYD
201: GSHPELAARL EKEILDTNPG VKWDDVAGLS DAKRILQETV VLPLFMPEYF QRIRRPWRGV LMFGPPGTGK TLLAKAVATE CGMTFMNISC SSLFGNWYGE
301: SERLTRCLFE LARAHAPTMN FIDDIDSLCS VRGSATEHET SRRLKSELLV QIDGLNNSNS TSGKMVTLLA ATNFPGNLDE ALRRRLEKRI YIPLPYFETR
401: KELIQINLKS IELAPEVDIE QVAQKTEGYS GDDLTNICRD ASLNGMRQKI AGKTIHEIKN ILKSEMLKIP VTMEDFLEAV DKIKPTVSSG DIQRHEKWYS
501: EFGSS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.