Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 5
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57222 | Soybean | cytosol | 43.18 | 82.3 |
| Solyc06g071980.2.1 | Tomato | cytosol | 46.69 | 73.42 |
| VIT_17s0000g01550.t01 | Wine grape | cytosol, plastid | 73.47 | 72.2 |
| KRH63756 | Soybean | cytosol, plastid | 69.12 | 66.94 |
| KRH54195 | Soybean | plastid | 69.04 | 66.64 |
| KRH03951 | Soybean | nucleus | 66.86 | 65.28 |
| Solyc06g072000.1.1 | Tomato | plastid | 53.81 | 62.61 |
| CDX92656 | Canola | cytosol | 20.33 | 56.38 |
| Solyc09g074950.2.1 | Tomato | plastid | 56.65 | 54.73 |
| Solyc06g084530.2.1 | Tomato | extracellular, nucleus | 56.99 | 54.44 |
| AT1G62130.1 | Thale cress | cytosol, plastid | 45.69 | 52.35 |
| AT4G24860.1 | Thale cress | cytosol, plastid | 47.11 | 50.18 |
| Solyc03g082630.2.1 | Tomato | endoplasmic reticulum | 14.14 | 44.83 |
| Solyc08g083020.2.1 | Tomato | plastid | 13.14 | 43.73 |
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 14.06 | 42.86 |
| Solyc03g007760.2.1 | Tomato | endoplasmic reticulum | 28.7 | 41.53 |
| Solyc08g081740.2.1 | Tomato | unclear | 28.45 | 40.67 |
| Solyc11g013570.1.1 | Tomato | cytosol | 9.12 | 35.97 |
| Solyc02g070440.2.1 | Tomato | cytosol | 11.05 | 34.2 |
| Solyc02g014350.2.1 | Tomato | mitochondrion | 26.11 | 31.29 |
| Solyc01g094150.2.1 | Tomato | nucleus | 12.8 | 31.16 |
| Solyc11g013700.1.1 | Tomato | cytosol | 10.04 | 30.3 |
| Solyc06g066810.2.1 | Tomato | cytosol | 12.72 | 29.34 |
| Solyc11g067240.1.1 | Tomato | plastid | 10.54 | 29.17 |
| Solyc11g007170.1.1 | Tomato | cytosol | 9.79 | 28.96 |
| Solyc11g067230.1.1 | Tomato | cytosol | 10.46 | 28.94 |
| Solyc10g019190.1.1 | Tomato | cytosol | 8.54 | 28.73 |
| Solyc11g013650.1.1 | Tomato | cytosol | 8.45 | 28.69 |
| Solyc11g050800.1.1 | Tomato | cytosol | 7.28 | 27.62 |
| Solyc11g050880.1.1 | Tomato | cytosol | 11.05 | 26.14 |
| Solyc02g094100.2.1 | Tomato | nucleus | 14.39 | 25.75 |
| Solyc12g040520.1.1 | Tomato | cytosol | 11.3 | 25.42 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:2.60.200.20 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | ncoils:Coil | InterPro:FHA_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0016787 | GO:GO:0016887 | InterPro:IPR000253 | UniProt:K4BJV3 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF84 | SMART:SM00382 | InterPro:SMAD_FHA_dom_sf |
| SUPFAM:SSF49879 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc03g110900.2 | EnsemblPlants:Solyc03g110900.2.1 | UniParc:UPI0002768B2F | SEG:seg |
Description
No Description!
Coordinates
chr3:-:61618311..61637433
Molecular Weight (calculated)
129447.0 Da
IEP (calculated)
6.656
GRAVY (calculated)
-0.357
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVATRRSGSL PSTVKRSASS SDDSSSKRQK VVDNNNNNNN AESSEKPKSP PPTENPKELS STDPPEFAAV TAPDGETTAV PAAKGEDAPS VSVVATPIAE
0101: GATPAIVDKP RSSVTLRKLN QGSETTSPWC RLISEFPQNP TIHVSATNFL IGSSKNAHLP IKQQTVSATL CSIRLTQHEG NWVAVLESRG KGSVQVNGKT
0201: VRRSTSCILN SGDELVFGVT GSHAYIFEQL PYELGVKSPP SDVRTSAGKL LRVERRAGDA SAVAGASILA SLSSLRQDPS RLKPTSQVSG NELPSSPVIH
0301: EDELDGLEVD SAAHVGSSSA ADVSLTSKIP PLDGNLNDSR EAGNMPEERE WNRDSIPASA AGVSLRCAVF KEEIHAAIVD GQQLDVSFDS FPYYLSENTK
0401: NVLIAASYIH LKHKEQVKYT SELSTINPRI LLSGPAGSEI YQEMLAKALA HYYGAKLLIF DSHSFLGGLS AKEAELLKEG GSAHKISANS KQIPGEPDLS
0501: KGNGSSSGQV TNANTLTDPL GLEAHPKMEI GNVPSLAGTS KNTLFKIGDK VRFIGSASGG LYSNSTRGPT FGTRGKIVLP FEDNALSKIG VRFDKPIPDG
0601: VNFGGLCDDG HGFFCKASEL RLESTGADDL DKLLISTLFE VVFSESRKSP FILFMKDAEK SMAGSSESYT TFKNRLEKLP GNIIVIGSHA HTDNRKEKSH
0701: PGGLLFTKFG SNQTALLDLA FPDSFGKLHD RGKEVTKTTK LLTKLFPNKV TIHMPQDEAL LSDWKQQLDR DADTLKMKGN LNSLRTVLNR NGLDCDGLDT
0801: LCIKDQTFSV ESAEKVVGWA LSHHLMQNPD ANPDVRLVLS PLSIQYGLEI LQAMQNESKS LKKSLKDIVT ENEFEKRLLA DVIPPSDIGV TFDDIGALEN
0901: VKDTLKELVM LPLQRPELFC KGQLTKPCKG ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV VFVDEVDSML
1001: GRRENPGEHE AMRKMKNEFM VNWDGLRTKD TERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDAPNRAK ILKVILAKED LSPDVDLDAV ASMTDGYSGS
1101: DLKNLCVTAA YQPIREILEK EKKEHAAAMA EGRPTPTPCG GADIRPLNMD DFKNAHERVC ASVSSESINM TELLQWNELY GEGGSRRKKS LSYFM
0101: GATPAIVDKP RSSVTLRKLN QGSETTSPWC RLISEFPQNP TIHVSATNFL IGSSKNAHLP IKQQTVSATL CSIRLTQHEG NWVAVLESRG KGSVQVNGKT
0201: VRRSTSCILN SGDELVFGVT GSHAYIFEQL PYELGVKSPP SDVRTSAGKL LRVERRAGDA SAVAGASILA SLSSLRQDPS RLKPTSQVSG NELPSSPVIH
0301: EDELDGLEVD SAAHVGSSSA ADVSLTSKIP PLDGNLNDSR EAGNMPEERE WNRDSIPASA AGVSLRCAVF KEEIHAAIVD GQQLDVSFDS FPYYLSENTK
0401: NVLIAASYIH LKHKEQVKYT SELSTINPRI LLSGPAGSEI YQEMLAKALA HYYGAKLLIF DSHSFLGGLS AKEAELLKEG GSAHKISANS KQIPGEPDLS
0501: KGNGSSSGQV TNANTLTDPL GLEAHPKMEI GNVPSLAGTS KNTLFKIGDK VRFIGSASGG LYSNSTRGPT FGTRGKIVLP FEDNALSKIG VRFDKPIPDG
0601: VNFGGLCDDG HGFFCKASEL RLESTGADDL DKLLISTLFE VVFSESRKSP FILFMKDAEK SMAGSSESYT TFKNRLEKLP GNIIVIGSHA HTDNRKEKSH
0701: PGGLLFTKFG SNQTALLDLA FPDSFGKLHD RGKEVTKTTK LLTKLFPNKV TIHMPQDEAL LSDWKQQLDR DADTLKMKGN LNSLRTVLNR NGLDCDGLDT
0801: LCIKDQTFSV ESAEKVVGWA LSHHLMQNPD ANPDVRLVLS PLSIQYGLEI LQAMQNESKS LKKSLKDIVT ENEFEKRLLA DVIPPSDIGV TFDDIGALEN
0901: VKDTLKELVM LPLQRPELFC KGQLTKPCKG ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV VFVDEVDSML
1001: GRRENPGEHE AMRKMKNEFM VNWDGLRTKD TERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDAPNRAK ILKVILAKED LSPDVDLDAV ASMTDGYSGS
1101: DLKNLCVTAA YQPIREILEK EKKEHAAAMA EGRPTPTPCG GADIRPLNMD DFKNAHERVC ASVSSESINM TELLQWNELY GEGGSRRKKS LSYFM
0001: MVETRRSSSA SKRFCASSSS PEASSSQRPN KRSKVKIDAA ASSLEPATAE PAGSSSASEV PIENQGPASD PGSESGEPEL GSSDPQAMDA EKPVVTTDVP
0101: VMENSPETDA NPEVEVLATP TVAGEAVADA DKSKAAKKRA LKAPWAKLLS QYSQNPHRVI RGPVFTVGRR GCDLSIRDQA MPSTLCELKQ SEHGGPSVAS
0201: LEILGNGVIV HVNGKCYQKS TCVHLRGGDE VIFSLNGKHA YIFQPVKDEN LAAPDRASSL SICEARGAPL KGVHVETRAG DVDGASDVDG ASILASLSKL
0301: RSFHLLPPIA KAGKRQQNPA VPVVPSSFND CISDTDMNDA DSNNDHAAVA SVEKIAAAST PGTANENLNV DGSGLDPFQE ADGGNVPAAG YEIRPIVHLL
0401: GESSSFDIRG SISRLLDERR EVKEFLREFD LSSTISTRRQ AFKDSLRGGV LNAQNIDISF ENFPYYLSAT TKGVLMISMY VHMNGGSKYA NFATDLTTAC
0501: PRILLSGPSG SEIYQEMLAK ALAKQFGAKL MIVDSLLLPG GSPAREAESS KEGSRRERLS MLAKRAVQAA QVLQHKKPTS SVDADITGGS TLSSQALPKQ
0601: EVSTATSKSY TFKAGDRVKF VGPSASAISS LQGQLRGPAI GSQGKVALAF EDNCASKIGI RFDRPVQDGN DLGGLCEEDH GFFCAASSLR LEGSSSDDAD
0701: KLAVNEIFEV ALSESEGGSL ILFLKDIEKS LVGNSDVYAT LKSKLETLPE NIVVIASQTQ LDSRKEKSHP GGFLFTKFGG NQTALLDLAF PDNFGKLHDR
0801: SKETPKSMKQ ITRLFPNKIA IQLPQEEALL SDWKEKLDRD TEILKVQANI TSILAVLAKN KLDCPDLGTL CIKDQTLPSE SVEKVVGWAF GHHLMICTEP
0901: IVKDNKLVIS AESISYGLQT LHDIQNENKS LKKSLKDVVT ENEFEKKLLS DVIPPSDIGV SFDDIGALEN VKETLKELVM LPLQRPELFD KGQLTKPTKG
1001: ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV IFVDEVDSML GRRENPGEHE AMRKMKNEFM VNWDGLRTKD
1101: RERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDATNRSK ILSVILAKEE IAPDVDLEAI ANMTDGYSGS DLKNLCVTAA HFPIREILEK EKKEKTAAQA
1201: ENRPTPPLYS CTDVRSLTMN DFKAAHDQVC ASVSSDSSNM NELQQWNELY GEGGSRKKTS LSYFM
0101: VMENSPETDA NPEVEVLATP TVAGEAVADA DKSKAAKKRA LKAPWAKLLS QYSQNPHRVI RGPVFTVGRR GCDLSIRDQA MPSTLCELKQ SEHGGPSVAS
0201: LEILGNGVIV HVNGKCYQKS TCVHLRGGDE VIFSLNGKHA YIFQPVKDEN LAAPDRASSL SICEARGAPL KGVHVETRAG DVDGASDVDG ASILASLSKL
0301: RSFHLLPPIA KAGKRQQNPA VPVVPSSFND CISDTDMNDA DSNNDHAAVA SVEKIAAAST PGTANENLNV DGSGLDPFQE ADGGNVPAAG YEIRPIVHLL
0401: GESSSFDIRG SISRLLDERR EVKEFLREFD LSSTISTRRQ AFKDSLRGGV LNAQNIDISF ENFPYYLSAT TKGVLMISMY VHMNGGSKYA NFATDLTTAC
0501: PRILLSGPSG SEIYQEMLAK ALAKQFGAKL MIVDSLLLPG GSPAREAESS KEGSRRERLS MLAKRAVQAA QVLQHKKPTS SVDADITGGS TLSSQALPKQ
0601: EVSTATSKSY TFKAGDRVKF VGPSASAISS LQGQLRGPAI GSQGKVALAF EDNCASKIGI RFDRPVQDGN DLGGLCEEDH GFFCAASSLR LEGSSSDDAD
0701: KLAVNEIFEV ALSESEGGSL ILFLKDIEKS LVGNSDVYAT LKSKLETLPE NIVVIASQTQ LDSRKEKSHP GGFLFTKFGG NQTALLDLAF PDNFGKLHDR
0801: SKETPKSMKQ ITRLFPNKIA IQLPQEEALL SDWKEKLDRD TEILKVQANI TSILAVLAKN KLDCPDLGTL CIKDQTLPSE SVEKVVGWAF GHHLMICTEP
0901: IVKDNKLVIS AESISYGLQT LHDIQNENKS LKKSLKDVVT ENEFEKKLLS DVIPPSDIGV SFDDIGALEN VKETLKELVM LPLQRPELFD KGQLTKPTKG
1001: ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV IFVDEVDSML GRRENPGEHE AMRKMKNEFM VNWDGLRTKD
1101: RERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDATNRSK ILSVILAKEE IAPDVDLEAI ANMTDGYSGS DLKNLCVTAA HFPIREILEK EKKEKTAAQA
1201: ENRPTPPLYS CTDVRSLTMN DFKAAHDQVC ASVSSDSSNM NELQQWNELY GEGGSRKKTS LSYFM
Arabidopsis Description
AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WM93]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.