Factsheet for Solyc11g013570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013700.1.1	Tomato	cytosol	89.44	68.43
Solyc11g013650.1.1	Tomato	cytosol	78.22	67.33
PGSC0003DMT400071442	Potato	cytosol	66.34	61.66
Solyc11g050800.1.1	Tomato	cytosol	56.11	53.97
Solyc11g050880.1.1	Tomato	cytosol	77.56	46.53
Solyc12g040520.1.1	Tomato	cytosol	77.89	44.44
Solyc10g019190.1.1	Tomato	cytosol	51.16	43.66
Solyc06g066810.2.1	Tomato	cytosol	67.0	39.19
Solyc02g070440.2.1	Tomato	cytosol	43.23	33.94
Solyc11g007170.1.1	Tomato	cytosol	42.9	32.18
Solyc11g067230.1.1	Tomato	cytosol	42.57	29.86
Solyc11g067240.1.1	Tomato	plastid	42.24	29.63
Solyc01g094150.2.1	Tomato	nucleus	38.94	24.03
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	29.04	23.34
Solyc08g083020.2.1	Tomato	plastid	27.39	23.12
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	28.38	21.94
Solyc02g094100.2.1	Tomato	nucleus	39.6	17.96
Solyc06g071980.2.1	Tomato	cytosol	33.66	13.42
Solyc08g081740.2.1	Tomato	unclear	36.96	13.4
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	33.66	12.35
Solyc02g014350.2.1	Tomato	mitochondrion	33.66	10.23
Solyc06g072000.1.1	Tomato	plastid	33.66	9.93
Solyc03g110900.2.1	Tomato	nucleus	35.97	9.12
Solyc09g074950.2.1	Tomato	plastid	35.64	8.73
Solyc06g084530.2.1	Tomato	extracellular, nucleus	34.65	8.39

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	UniProt:K4D6G1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g013570.1	EnsemblPlants:Solyc11g013570.1.1	UniParc:UPI000276A5C1	InterPro:Vps4_C

Description

No Description!

Coordinates

chr11:+:6761288..6763931

Molecular Weight (calculated)

34197.3 Da

IEP (calculated)

8.037

GRAVY (calculated)

-0.421

Length

303 amino acids

Sequence
(BLAST)

001: MSPQNTEERI ESTVLYDGPH PELAPRLEKE ILETNPRVKW DDIAGLSEAK RILQEAIVLP LLMPGYFQGI RRPRRGVLMF GPPGTGKTLL AKVVATEYWY
101: GESERLTRCL FEIARTHAPT TIFIDEIDYL CSAEGSATEH EASRRVKAEL LVQIDGLNNS NKMVTVLAAT NFPESLDEAL RRRLEKRIYI PLPDFKSRKE
201: LMKINLKSIK LAPGVNIDQV ARRTEGYSGD DLTNVCRDAS FNGMRQKISG KTTEKIKNMS KSEILNIPVT MDDLLEALDK IKPTVSAGDI QRYEKWLSQF
301: GSS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.