Factsheet for Solyc11g013650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013700.1.1	Tomato	cytosol	91.19	81.06
Solyc11g013570.1.1	Tomato	cytosol	67.33	78.22
PGSC0003DMT400071442	Potato	cytosol	48.58	52.45
Solyc11g050800.1.1	Tomato	cytosol	46.59	52.06
Solyc11g050880.1.1	Tomato	cytosol	69.6	48.51
Solyc12g040520.1.1	Tomato	cytosol	69.6	46.14
Solyc10g019190.1.1	Tomato	cytosol	40.62	40.28
Solyc06g066810.2.1	Tomato	cytosol	52.27	35.52
Solyc02g070440.2.1	Tomato	cytosol	32.39	29.53
Solyc11g007170.1.1	Tomato	cytosol	31.82	27.72
Solyc11g067230.1.1	Tomato	cytosol	30.97	25.23
Solyc11g067240.1.1	Tomato	plastid	30.68	25.0
Solyc01g094150.2.1	Tomato	nucleus	30.4	21.79
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	21.88	20.42
Solyc08g083020.2.1	Tomato	plastid	20.74	20.33
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	21.59	19.39
Solyc02g094100.2.1	Tomato	nucleus	31.53	16.62
Solyc06g071980.2.1	Tomato	cytosol	25.28	11.71
Solyc08g081740.2.1	Tomato	unclear	27.56	11.6
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	25.57	10.9
Solyc02g014350.2.1	Tomato	mitochondrion	26.99	9.53
Solyc06g072000.1.1	Tomato	plastid	25.57	8.76
Solyc03g110900.2.1	Tomato	nucleus	28.69	8.45
Solyc09g074950.2.1	Tomato	plastid	27.84	7.92
Solyc06g084530.2.1	Tomato	extracellular, nucleus	28.12	7.91

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	UniProt:K4D6G9	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF09336	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc11g013650.1	EnsemblPlants:Solyc11g013650.1.1	UniParc:UPI000276A5C9	InterPro:Vps4_C	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:6915039..6919421

Molecular Weight (calculated)

39533.7 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.294

Length

352 amino acids

Sequence
(BLAST)

001: MYDSSLSVVT SLQGCTIVGL QVQQEQQQQR MLQPYQVQQI LIQQVASLAA TNYSQNSIMS NNNLVDNIYS ARMEGGIRSN VQNGEERIES TVLYDGPHPE
101: LAARLEKEIL ETNLGVKWDD IAGLSEAKRI LQEVMVLPLL MPEYFQGIRR PRRGVLMFGP PGTGKTLLAK AVATECGTTF LNISCSSLCG DWYGVSERLT
201: RCLFEIARTH APTTIFIDEI DYLCSAKGRR LKKRIYIPLP DFKSRKELIK INLKSIEMQL TPGVNIDQVA RRTEGYSGYD LTNVCRDASF NGMRQKISGK
301: TTEEIKNMSK SEILNIPVTM DDLLEALDKI KPTVSAGDIQ RYEKWLSEFG SS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.