Factsheet for Solyc08g081740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	97.01	97.24
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	75.48	75.48
AT1G64110.2	Thale cress	cytosol	71.17	71.77
KRH27876	Soybean	cytosol	72.01	71.75
KRH41256	Soybean	extracellular	72.61	71.16
CDY08360	Canola	endoplasmic reticulum	70.22	70.64
KRH59989	Soybean	endoplasmic reticulum	70.93	70.6
Bra027756.1-P	Field mustard	endoplasmic reticulum	70.1	70.52
CDY38192	Canola	plasma membrane	70.1	70.52
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	69.5	70.34
KRH77598	Soybean	endoplasmic reticulum	70.45	70.2
Os01t0226400-01	Rice	plasma membrane	68.78	68.45
Zm00001d008983_P001	Maize	vacuole	69.26	68.44
Zm00001d039315_P003	Maize	vacuole	68.54	68.13
TraesCS3B01G178200.1	Wheat	cytosol, vacuole	68.3	67.98
TraesCS3D01G159200.1	Wheat	cytosol, vacuole	67.7	67.7
EES00021	Sorghum	endoplasmic reticulum	68.54	67.65
TraesCS3A01G151300.2	Wheat	cytosol, vacuole	67.94	67.62
HORVU3Hr1G030770.20	Barley	cytosol, vacuole	67.82	67.42
Solyc08g083020.2.1	Tomato	plastid	18.3	42.62
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	19.26	41.07
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	18.3	40.58
Solyc06g071980.2.1	Tomato	cytosol	35.77	39.34
Solyc11g013570.1.1	Tomato	cytosol	13.4	36.96
Solyc02g070440.2.1	Tomato	cytosol	14.47	31.35
Solyc11g007170.1.1	Tomato	cytosol	15.07	31.19
Solyc01g094150.2.1	Tomato	nucleus	17.7	30.14
Solyc06g072000.1.1	Tomato	plastid	36.72	29.89
Solyc11g067230.1.1	Tomato	cytosol	15.43	29.86
Solyc11g067240.1.1	Tomato	plastid	15.43	29.86
Solyc06g066810.2.1	Tomato	cytosol	18.3	29.54
Solyc11g050800.1.1	Tomato	cytosol	11.12	29.52
Solyc11g013700.1.1	Tomato	cytosol	13.64	28.79
Solyc03g110900.2.1	Tomato	nucleus	40.67	28.45
Solyc11g013650.1.1	Tomato	cytosol	11.6	27.56
Solyc09g074950.2.1	Tomato	plastid	40.55	27.41
Solyc06g084530.2.1	Tomato	extracellular, nucleus	40.67	27.18
Solyc10g019190.1.1	Tomato	cytosol	11.48	27.04
Solyc02g014350.2.1	Tomato	mitochondrion	30.62	25.68
Solyc02g094100.2.1	Tomato	nucleus	20.22	25.3
Solyc12g040520.1.1	Tomato	cytosol	15.43	24.29
Solyc11g050880.1.1	Tomato	cytosol	14.47	23.96

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030154	GO:GO:0048235	UniProt:K4CPH0
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF98	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g081740.2	EnsemblPlants:Solyc08g081740.2.1	TMHMM:TMhelix	UniParc:UPI000276C2BB	SEG:seg

Description

No Description!

Coordinates

chr8:-:64709719..64715459

Molecular Weight (calculated)

92729.7 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.291

Length

836 amino acids

Sequence
(BLAST)

001: MEQKNMLLSA LGVGIGVGVG VGIGLASGQT VSRWASGSAA NVITPLIMEQ EMLNLIANGK DSKVTFDEFP YYLSEQTRVL LTSASFVHLT NADFAKHTRN
101: LSPASRTILL SGPAELYQQM LAKALAHYFN AKLLLLDVTD FSLKMQSKYG GTCKEYSFKR SISETTLGRM SGMFGSLSML QSKEENKGSL RRQSSGVDIG
201: SKDGSFITTN LRRNASASAN LNDISSYGSS GNLAPLMRNS SWAFDEKLLI QTLYKIIVRV SKTSPMVLYL RDVEKFFCRS EKIYVLFQKM LKKLSGAVLI
301: LGSRIVDPGN DYREIDERLS SVFPYNLEIK PPEEETHLVS WKTQLEEDMK MIQFQDNRNH IMEVLSANDI ECEDLGSICM SDTMVLSNYI EEIVVSAISY
401: HLMCTKDPEY RNGKLVISSS SLSHGLDVFQ EGKSARKDSI KLEAQAETSK DAQGREISIT KPEVKTEGVL PENKGEAEAP APPVIDGNIT TPAPKTPEAP
501: PDNEFEKRIR PEVIPANEIG VTFADIGALD ELKESLQELV MLPLRRPDLF KGGLLKPCRG ILLFGPPGTG KTMLAKAIAR EAGASFINVS MSTITSKWFG
601: EDEKNVRALF TLAAKVSPTI IFVDEVDSML GQRSRAGEHE AMRKIKNEFM THWDGLLTKS GEKILVLAAT NRPFDLDEAI IRRFERRIMV GLPSVENREM
701: IMKTLLAKER VDDGMDFKEL ATMTEGYSGS DLKNLCTTAA YRPVRELIQQ ERLKDLDKKR RAEEVKKGGV APSTDVDKED KVITIRPLNM ADFKEAKNQV
801: AASFAAGGAI MSELKQWNES YGEGGSRKKE QLSYFL

Best Arabidopsis Sequence Match ( AT1G64110.3 )
(BLAST)

001: MDSKQMLLSA LGVGVGVGVG LGLASGQAVG KWAGGNSSSN NAVTADKMEK EILRQVVDGR ESKITFDEFP YYLSEQTRVL LTSAAYVHLK HFDASKYTRN
101: LSPASRAILL SGPAELYQQM LAKALAHFFD AKLLLLDVND FALKIQSKYG SGNTESSSFK RSPSESALEQ LSGLFSSFSI LPQREESKAG GTLRRQSSGV
201: DIKSSSMEGS SNPPKLRRNS SAAANISNLA SSSNQAPLKR SSSWSFDEKL LVQSLYKVLA YVSKANPIVL YLRDVENFLF RSQRTYNLFQ KLLQKLSGPV
301: LILGSRIVDL SSEDAQEIDE KLSAVFPYNI DIRPPEDETH LVSWKSQLER DMNMIQTQDN RNHIMEVLSE NDLICDDLES ISFEDTKVLS NYIEEIVVSA
401: LSYHLMNNKD PEYRNGKLVI SSISLSHGFS LFREGKAGGR EKLKQKTKEE SSKEVKAESI KPETKTESVT TVSSKEEPEK EAKAEKVTPK APEVAPDNEF
501: EKRIRPEVIP AEEINVTFKD IGALDEIKES LQELVMLPLR RPDLFTGGLL KPCRGILLFG PPGTGKTMLA KAIAKEAGAS FINVSMSTIT SKWFGEDEKN
601: VRALFTLASK VSPTIIFVDE VDSMLGQRTR VGEHEAMRKI KNEFMSHWDG LMTKPGERIL VLAATNRPFD LDEAIIRRFE RRIMVGLPAV ENREKILRTL
701: LAKEKVDENL DYKELAMMTE GYTGSDLKNL CTTAAYRPVR ELIQQERIKD TEKKKQREPT KAGEEDEGKE ERVITLRPLN RQDFKEAKNQ VAASFAAEGA
801: GMGELKQWNE LYGEGGSRKK EQLTYFL

Arabidopsis Description

p-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5A3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.