Factsheet for Solyc06g072000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071980.2.1	Tomato	cytosol	63.88	86.32
KRH57222	Soybean	cytosol	41.09	67.3
Solyc03g110900.2.1	Tomato	nucleus	62.61	53.81
CDX92656	Canola	cytosol	22.2	52.9
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	59.98	50.66
KRH63756	Soybean	cytosol, plastid	58.71	48.87
KRH54195	Soybean	plastid	58.81	48.79
KRH03951	Soybean	nucleus	56.86	47.71
AT1G62130.1	Thale cress	cytosol, plastid	45.57	44.87
AT4G24860.1	Thale cress	cytosol, plastid	48.49	44.38
Solyc06g084530.2.1	Tomato	extracellular, nucleus	52.09	42.77
Solyc09g074950.2.1	Tomato	plastid	50.92	42.28
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	15.19	41.38
Solyc08g083020.2.1	Tomato	plastid	14.31	40.95
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	15.19	39.8
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	31.06	38.62
Solyc08g081740.2.1	Tomato	unclear	29.89	36.72
Solyc11g013570.1.1	Tomato	cytosol	9.93	33.66
Solyc02g070440.2.1	Tomato	cytosol	11.88	31.61
Solyc02g014350.2.1	Tomato	mitochondrion	28.43	29.29
Solyc01g094150.2.1	Tomato	nucleus	13.63	28.51
Solyc11g013700.1.1	Tomato	cytosol	10.71	27.78
Solyc06g066810.2.1	Tomato	cytosol	13.73	27.22
Solyc11g050800.1.1	Tomato	cytosol	8.28	26.98
Solyc10g019190.1.1	Tomato	cytosol	9.15	26.48
Solyc11g007170.1.1	Tomato	cytosol	10.32	26.24
Solyc11g067230.1.1	Tomato	cytosol	10.91	25.93
Solyc11g067240.1.1	Tomato	plastid	10.91	25.93
Solyc11g013650.1.1	Tomato	cytosol	8.76	25.57
Solyc11g050880.1.1	Tomato	cytosol	11.98	24.36
Solyc02g094100.2.1	Tomato	nucleus	15.48	23.8
Solyc12g040520.1.1	Tomato	cytosol	12.17	23.54

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:FHA_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
GO:GO:0016887	InterPro:IPR000253	UniProt:K4C8S2	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF84	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g072000.1	EnsemblPlants:Solyc06g072000.1.1
UniParc:UPI000276557C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44363712..44375651

Molecular Weight (calculated)

113445.0 Da

IEP (calculated)

8.548

GRAVY (calculated)

-0.364

Length

1027 amino acids

Sequence
(BLAST)

0001: MVSPKKSSTS RPPTGNKRSS SSLDDKSPPS QRPKANDDKL NSSEKSMTPS EKAKELCSTD QSKLGGNNST NEKIGCATVG KTIMVIGKAM TPVIEGAGTE
0101: KPWCRLISEF PQNPTVEISE PRFMVGVGKD LPENAMVCVI RREKYQNNWV AIIERKANRK PVRVNGHKLD RNTSGLLNSG DEIVLGQKGK YAYIFQQLLF
0201: SPPNVNVGSS SSSAADVGQG KMLEQRRLTE ESMHGSTSSG MSCVLREQIR ATIIDGIQVS FDDFPYYLSE TTKAMLIANT YIHLKHREQL KYVSGLPAVN
0301: SRIMLSGPTG SEIYQEMLVK ALARYYGAKL LIFDSNAFLG GLSVKETEPM KEACSAHKSS SSGASNVFRT GDRVKYIGSA SGAQHLGPVW CPKVGSTGRV
0401: ALSFNDNLFA KVGVRFDNPF IYGIDLGGLC DDSHGYFCKV SELCVDAPAV EDPYTLLTNT LFEVVFNESL YSPFILFVKD ADKVMAGNAK LYSTFKSRLE
0501: KLPNYVISIG SHAHSDNHKE KDSPEKQHDK GKEVAKNSKF LTELFPNIVA IHMPQDSPEK QHDKGKEVAK NSRFLTELFP NIVAIHMPQD EALLSIWKQQ
0601: LEQDAYTLIM KENFNSLQTV LSRNGLKCNG LQTLCITDRN FSVESAEKVV GWALSHHLMQ NKSVDPDEAL VLSPVSIQYG LKVLLNQNDT KSLKKSVKDV
0701: ATENEFENRI LDDVISPGDI GVTFDDIGAL ENVKDTIKEL VMLPLQRPEL FCKSQLTKPC KGILLFGPPG TGKTMLAKAV ATEAGANFIN ISMSSITSKL
0801: FGEGEKCVKA VFSLASKIAP CVVFVDEVDS LLGRRKNSRE HKAMRKIKNE FLVNWDGLRT KDSERVMILA ATNRPFDLDE AVIRRLPRRL MVNLPDAPNR
0901: AKILKVILAK EDLAQDVDLD SVASMTNGYS GSDLKNLCVA AAYRPIKEIV EKEKKEHAAA RADGRPPPAP YSSADLRPLN MDDFRYSHQQ VCASVSSESV
1001: NMTKLLEWND LYGEGGSRKK QSFSYYI

Best Arabidopsis Sequence Match ( AT4G24860.4 )
(BLAST)

0001: MVSPGRSDST SGENNNPPDG SSGKRSPSSP ADKSPSKRQK LEDGGDTLPP SDSSKCVLGD TTPTSGDSQI DASAAAATTS QPPPVAQAIL QEKASFERWT
0101: YVHSRFENPW CRLLSQSAQY PSINIFLSVF KFLDGELSSY SFKITRIQRK GNVLAVLETM GNNGHMWING NYAEGNINHV LNSGDEVVIG LSRIAFVYQQ
0201: MPIVAAKPGS VQVPAGKFLD LERMTGHSII SSLERLIHAS SKSHQAPESM VQVDGMEGIF SVNNQDSKME ILDEKNEVTS NSQQASTSGN GLQSAIFREA
0301: IQAGFVRGEN MEVSFKNFPY YLSEYTKAAL LYASYIHLKK KEYVQFVSDM TPMNPRILLS GPAGSEIYQE TLAKALARDL EAKLLIFDSY PILGALTAKE
0401: VESLRDGLAS NKSCKLPNQS IELIDQGKSS DLSAGGGVAS SLSPAASSDS DSQLQLEPET LPRSVNHTLK KGDRVKFFST GLYSGPSTLG LRGPPNGTTG
0501: KVILVFDENP SAKVGVRFDK PIPDGVDLGE LCESGHGFFC KATDLPFKSS SFKDLVRLLV NTLFEVVHSE SRTCPFILFL KDAEKSVAGN FDLYSAFQIR
0601: LEYLPENVIV ICSQTHSDHL KVKDIGRQKK QGKEVPHATE LLAELFENKI TIQMPQDEKR LTLWKHQMDR DAETSKVKSN FNHLRMVLRR RGLGCEGLET
0701: TWSRMCLKDL TLQRDSVEKI IGWAFGNHIS KNPDTDPAKV TLSRESIEFG IGLLQNDLKG STSSKKDIVV ENVFEKRLLS DVILPSDIDV TFDDIGALEK
0801: VKDILKELVM LPLQRPELFC KGELTKPCKG ILLFGPPGTG KTMLAKAVAK EADANFINIS MSSITSKWFG EGEKYVKAVF SLASKMSPSV IFVDEVDSML
0901: GRREHPREHE ASRKIKNEFM MHWDGLTTQE RERVLVLAAT NRPFDLDEAV IRRLPRRLMV GLPDTSNRAF ILKVILAKED LSPDLDIGEI ASMTNGYSGS
1001: DLKNLCVTAA HRPIKEILEK EKRERDAALA QGKVPPPLSG SSDLRALNVE DFRDAHKWVS ASVSSESATM TALQQWNKLH GEGGSGKQQS FSFYT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JRR2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.