Factsheet for Solyc11g013700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013650.1.1	Tomato	cytosol	81.06	91.19
Solyc11g013570.1.1	Tomato	cytosol	68.43	89.44
PGSC0003DMT400071442	Potato	cytosol	53.54	65.03
Solyc11g050800.1.1	Tomato	cytosol	45.71	57.46
Solyc11g050880.1.1	Tomato	cytosol	70.45	55.25
Solyc12g040520.1.1	Tomato	cytosol	70.2	52.35
Solyc10g019190.1.1	Tomato	cytosol	45.71	50.99
Solyc06g066810.2.1	Tomato	cytosol	53.28	40.73
Solyc02g070440.2.1	Tomato	cytosol	34.34	35.23
Solyc11g007170.1.1	Tomato	cytosol	34.09	33.42
Solyc11g067230.1.1	Tomato	cytosol	34.34	31.48
Solyc11g067240.1.1	Tomato	plastid	34.09	31.25
Solyc01g094150.2.1	Tomato	nucleus	32.83	26.48
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	23.48	24.67
Solyc08g083020.2.1	Tomato	plastid	22.22	24.51
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	23.23	23.47
Solyc02g094100.2.1	Tomato	nucleus	31.82	18.86
Solyc06g071980.2.1	Tomato	cytosol	27.53	14.34
Solyc08g081740.2.1	Tomato	unclear	28.79	13.64
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	26.77	12.83
Solyc02g014350.2.1	Tomato	mitochondrion	27.27	10.83
Solyc06g072000.1.1	Tomato	plastid	27.78	10.71
Solyc03g110900.2.1	Tomato	nucleus	30.3	10.04
Solyc09g074950.2.1	Tomato	plastid	29.8	9.54
Solyc06g084530.2.1	Tomato	extracellular, nucleus	29.55	9.35

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	UniProt:K4D6H4
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g013700.1	EnsemblPlants:Solyc11g013700.1.1	UniParc:UPI000276A5CE	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:6976833..6981216

Molecular Weight (calculated)

43969.8 Da

IEP (calculated)

5.578

GRAVY (calculated)

-0.222

Length

396 amino acids

Sequence
(BLAST)

001: MYDSSLSVVA SLQGCAVVGL QVQQEQQQQR MLQPYQVQQI LIQQVSSLAA TNYSQNSIVS NNNLVDNIYS ARMEGGISSN VQNAEECIES TVLYDGPHPE
101: LAAKLEKEIL ETNPGVKWDD IAGLSEAKRI LQEVMVLPLL MPEYFQGIRR PQRGVLIFGP SGTGKTLLAK VVATECGTTF LNISCSSLCG DCYGESERLT
201: QCLFEIARTH APTTIFIDEI DYLCSSKGSA TEHEASRRVK AELIVQIDGL NNSNKMVTVL AATNFPQSLD EALRRRLKKR IYIPLPDFKS RKELIKINLK
301: SIKLAPGVNI DQVARRTEGY SGDDLTKVCR DASFNGMRLK ISGKTTEEIK NISKSEILNI SITMDDFLEA LDKIKPTVSA TDIQRYEKWL LEFGSS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.