Factsheet for Solyc02g094100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052226	Potato	nucleus	96.86	96.86
VIT_14s0068g02130.t01	Wine grape	nucleus	71.41	71.41
KRH57680	Soybean	nucleus	65.57	66.46
KRG94255	Soybean	nucleus	64.97	65.86
CDY28494	Canola	plastid	63.47	65.43
Bra032982.1-P	Field mustard	plastid	63.02	64.97
CDY34176	Canola	plastid	63.02	64.97
GSMUA_Achr6P27610_001	Banana	cytosol	61.83	63.05
AT3G27120.1	Thale cress	nucleus	63.32	62.21
TraesCS5D01G123800.1	Wheat	nucleus	59.58	57.85
TraesCS5B01G110300.1	Wheat	nucleus	59.28	57.56
TraesCS5A01G109500.1	Wheat	nucleus	58.98	57.27
Zm00001d041083_P005	Maize	nucleus	56.74	55.9
KXG23422	Sorghum	nucleus	57.48	55.81
HORVU5Hr1G029910.10	Barley	cytosol, mitochondrion, nucleus	54.19	50.77
Solyc11g013570.1.1	Tomato	cytosol	17.96	39.6
Solyc02g070440.2.1	Tomato	cytosol	21.86	37.82
Solyc01g094150.2.1	Tomato	nucleus	26.05	35.44
Solyc11g067230.1.1	Tomato	cytosol	22.01	34.03
Solyc11g067240.1.1	Tomato	plastid	21.86	33.8
Solyc11g007170.1.1	Tomato	cytosol	20.06	33.17
Solyc11g050800.1.1	Tomato	cytosol	15.27	32.38
Os12t0443800-01	Rice	nucleus	18.26	31.94
Solyc11g013700.1.1	Tomato	cytosol	18.86	31.82
Solyc11g013650.1.1	Tomato	cytosol	16.62	31.53
Solyc06g066810.2.1	Tomato	cytosol	23.8	30.7
Solyc08g083020.2.1	Tomato	plastid	16.17	30.08
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	16.77	29.71
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	17.07	29.08
Solyc10g019190.1.1	Tomato	cytosol	15.27	28.73
Solyc11g050880.1.1	Tomato	cytosol	20.81	27.52
Solyc12g040520.1.1	Tomato	cytosol	21.41	26.93
Solyc06g071980.2.1	Tomato	cytosol	23.95	21.05
Solyc08g081740.2.1	Tomato	unclear	25.3	20.22
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	23.8	19.25
Solyc02g014350.2.1	Tomato	mitochondrion	24.1	16.15
Solyc06g072000.1.1	Tomato	plastid	23.8	15.48
Solyc03g110900.2.1	Tomato	nucleus	25.75	14.39
Solyc06g084530.2.1	Tomato	extracellular, nucleus	25.3	13.51
Solyc09g074950.2.1	Tomato	plastid	24.7	13.34

Protein Annotations

Gene3D:1.10.8.60	MapMan:13.3.6.5.5.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010569
GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0045128	UniProt:K4BDK5	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF17	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g094100.2	EnsemblPlants:Solyc02g094100.2.1	UniParc:UPI0002768A96	InterPro:Vps4_C	SEG:seg

Description

No Description!

Coordinates

chr2:+:54735494..54742292

Molecular Weight (calculated)

74285.9 Da

IEP (calculated)

7.568

GRAVY (calculated)

-0.602

Length

668 amino acids

Sequence
(BLAST)

001: MAGKEDSNKN TAPNSKSEKM EDEKSEASWR KEVDTNVKRL HSMLFGAEVA LKSKDFSSAT VLGLGLIGFL DSHSHSDADE AFIRPIRCEA MSNFDSARSS
101: LITESDRHAF EQAGRDPGCI FAQGKNIDIE KIKQSKYFLS LCQQHEDTAK GEQGNQLNRH ANVGSQTLKT PVHTSPRDFS LIKNRSFAND SSPEVLPVDR
201: FHPKHSYPKH QTVDIKDGEE ERTCVNGSKT RRLYRESNVS RDENISSPLC TEEADVDASP NGFVTARAKL EMDTRHKRGL SRSPSASISP QNDNTLMSKG
301: CGVRSYGFPR RGIRGNFVPP IRGSGGNNVG NVTSRTSGKG EDILDDSTRR CLEMLVGPDG ELPEKLRNIE PRLIEHISNE IMHRDPNVRW NDIAGLEHAK
401: KCVTEMVIWP LLRPDIFKGC RSPGRGLLLF GPPGTGKTMI GKAIAGEAKA TFFYISASSL TSKWIGEGEK LVRALFGVAS CRQPAVIFVD EIDSLLSQRK
501: SEGEHESSRR LKTQFLIEME GFDNVSEQIL LIGATNRPQE LDEAARRRLT KRLYVPLPSS EARAWIAKSL LEKDGLFKLS DDDIVSICKF TEGYSGSDMK
601: NLVKDASMGP LREALRHGIE ITKLKKEDMR PVTLQDFESA LQEVRPSVSL NELGAYEDWN KQFGSLAL

Best Arabidopsis Sequence Match ( AT3G27120.1 )
(BLAST)

001: MCGSVVSDSE REFEFHFWGF GHLGKEEERI MAGKRSSPFS SPLLRPPPEF LNVKEEGETE TPCWRKEVDE NLKRLQSLLF GADKFLEKSD FSSAQILGLR
101: LLGFLDSRSV TDADRDFIGP IRREVASKID LALEGLVSDS DRKAFELANT APGAIFGSKG GFDVEKIKQS KYFGFHVSQS NGKGVKEMEE RHDTDKLIPK
201: APKSMMQAKL TSLYGNSIGK PDNQRKTSVN NQDRASDECV IVERSHGFGF GTKRPHAETS SLANDGEVKE DGAPNGFVSA KIKLEMDVRQ KRGSTESPSS
301: CLSPQSDKNA LGRGYGSRSG GLRRGYRSNF VPPVKTNGNN VGNLTSRIGG KTDDALDDST RTCLEMLCGP DGELPEKLRN LEPRLIEHVS NEIMDRDPNV
401: RWDDIAGLEH AKKCVTEMVI WPLLRPDIFK GCRSPGKGLL LFGPPGTGKT MIGKAIAGEA KATFFYISAS SLTSKWIGEG EKLVRALFGV ASCRQPAVIF
501: VDEIDSLLSQ RKSDGEHESS RRLKTQFLIE MEGFDSGSEQ ILLIGATNRP QELDEAARRR LTKRLYIPLP SSEARAWIIQ NLLKKDGLFT LSDDDMNIIC
601: NLTEGYSGSD MKNLVKDATM GPLREALKRG IDITNLTKDD MRLVTLQDFK DALQEVRPSV SQNELGIYEN WNNQFGSLSL

Arabidopsis Description

FIGL1ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.