Factsheet for TraesCS5B01G110300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G123800.1	Wheat	nucleus	98.69	98.69
TraesCS5A01G109500.1	Wheat	nucleus	97.38	97.38
Zm00001d041083_P005	Maize	nucleus	77.91	79.06
HORVU5Hr1G029910.10	Barley	cytosol, mitochondrion, nucleus	81.54	78.68
KXG23422	Sorghum	nucleus	77.18	77.18
GSMUA_Achr6P27610_001	Banana	cytosol	66.72	70.08
VIT_14s0068g02130.t01	Wine grape	nucleus	63.95	65.87
KRG94255	Soybean	nucleus	62.5	65.25
KRH57680	Soybean	nucleus	62.5	65.25
Bra032982.1-P	Field mustard	plastid	60.03	63.73
CDY28494	Canola	plastid	60.03	63.73
CDY34176	Canola	plastid	59.88	63.58
Os12t0443800-01	Rice	nucleus	35.03	63.09
PGSC0003DMT400052226	Potato	nucleus	58.14	59.88
AT3G27120.1	Thale cress	nucleus	59.16	59.85
Solyc02g094100.2.1	Tomato	nucleus	57.56	59.28
TraesCS3B01G329000.2	Wheat	cytosol	20.35	36.18
TraesCS3B01G305600.2	Wheat	cytosol	20.35	35.44
TraesCS1B01G120800.1	Wheat	cytosol	12.21	33.2
TraesCS3B01G065200.1	Wheat	cytosol	21.08	33.1
TraesCS6B01G161700.1	Wheat	cytosol	20.93	32.95
TraesCS7B01G287800.1	Wheat	golgi	16.86	31.1
TraesCS3B01G299100.1	Wheat	cytosol	22.97	30.33
TraesCS3B01G178200.1	Wheat	cytosol, vacuole	23.11	18.93
TraesCS7B01G028300.1	Wheat	cytosol	21.51	18.76
TraesCS3B01G254800.2	Wheat	cytosol	21.95	18.76
TraesCS1B01G455200.1	Wheat	mitochondrion	23.11	18.62
TraesCS7B01G089500.1	Wheat	mitochondrion	21.8	15.42
TraesCS6B01G333700.1	Wheat	mitochondrion	21.8	15.32
TraesCS2B01G132900.3	Wheat	cytosol, plastid	24.27	15.18
TraesCS4B01G155600.1	Wheat	cytosol	23.4	14.64
TraesCS4B01G126300.7	Wheat	nucleus	24.85	13.59

Protein Annotations

Gene3D:1.10.8.60	MapMan:13.3.6.5.5.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF17	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5B01G110300	EnsemblPlants:TraesCS5B01G110300.1	InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:158780778..158795120

Molecular Weight (calculated)

75643.8 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.493

Length

688 amino acids

Sequence
(BLAST)

001: MEEQPHAADS SSAASQTNWR KEVDELLQRM HSLLFGADAA LERGDAAAAQ VLVLRLLGFL DSQTLSAYTG PEAAFVAPIR AAASSRLAAA SRAGASDSDR
101: VAFELAKKNA GCVFPKQGDV SIEKMKCSKY FQAFHEKSKG NVADQQNSAC EKFTIQGGPH IEESPADIDN EKLSIGASKL MAQSKITSLY GNKFLKANSV
201: SDKNMFKSEG NMSKEFACVE NEIRTNQNDN THPAYLGVEE DKKHCGPLQT SKRKHTGFRS PICEHANSPL SQDEADAPAN GFVTARIKLA MDTVQKHGHN
301: GHQGASVSPQ FDNNLSTRNY GVRPSWNSRR GPRGNFVRPI RNNGGSACNA INSRGVAGKN DDSMEDSIKK CLEMLCGPDG ELPEKLRNLE PRLIEHVSNE
401: IMDKDPNVRW DDIAGLDHAK KCVTEMVIWP LLRPDIFRGC RSPGRGLLLF GPPGTGKTMI GKAIAGEAKA TFFYISASSL TSKWIGEGEK LVRALFGVAC
501: CRQPAVIFVD EIDSLLSQRK SDGEHESSRR LKTQFLIEME GFDSGNEQIL LIGATNRPQE LDEAARRRLT KRLYIPLPSS EARTWIIRNL LEKDGLFKLS
601: EKETGVICKL TEGYSGSDMK NLVKDASMGP LREALQQGVE ITKLNKEEVR PVMLKDFEAA LQEVRPSVST SELGIYEEWN MQFGSLSI

Best Arabidopsis Sequence Match ( AT3G27120.1 )
(BLAST)

001: MCGSVVSDSE REFEFHFWGF GHLGKEEERI MAGKRSSPFS SPLLRPPPEF LNVKEEGETE TPCWRKEVDE NLKRLQSLLF GADKFLEKSD FSSAQILGLR
101: LLGFLDSRSV TDADRDFIGP IRREVASKID LALEGLVSDS DRKAFELANT APGAIFGSKG GFDVEKIKQS KYFGFHVSQS NGKGVKEMEE RHDTDKLIPK
201: APKSMMQAKL TSLYGNSIGK PDNQRKTSVN NQDRASDECV IVERSHGFGF GTKRPHAETS SLANDGEVKE DGAPNGFVSA KIKLEMDVRQ KRGSTESPSS
301: CLSPQSDKNA LGRGYGSRSG GLRRGYRSNF VPPVKTNGNN VGNLTSRIGG KTDDALDDST RTCLEMLCGP DGELPEKLRN LEPRLIEHVS NEIMDRDPNV
401: RWDDIAGLEH AKKCVTEMVI WPLLRPDIFK GCRSPGKGLL LFGPPGTGKT MIGKAIAGEA KATFFYISAS SLTSKWIGEG EKLVRALFGV ASCRQPAVIF
501: VDEIDSLLSQ RKSDGEHESS RRLKTQFLIE MEGFDSGSEQ ILLIGATNRP QELDEAARRR LTKRLYIPLP SSEARAWIIQ NLLKKDGLFT LSDDDMNIIC
601: NLTEGYSGSD MKNLVKDATM GPLREALKRG IDITNLTKDD MRLVTLQDFK DALQEVRPSV SQNELGIYEN WNNQFGSLSL

Arabidopsis Description

FIGL1ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.