Factsheet for TraesCS6B01G161700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G140700.1
TraesCS1B01G157100.1
TraesCS1D01G139500.1
TraesCS4A01G035800.1
TraesCS4A01G294600.1
TraesCS4B01G019100.2
TraesCS4B01G268600.1
TraesCS4D01G017300.1
TraesCS4D01G267900.1
TraesCS5B01G014400.1
TraesCS5D01G022200.2
TraesCS7A01G223600.1
TraesCS7B01G190400.1
TraesCS7D01G225200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	TraesCS1A01G140700.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS1B01G157100.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS1D01G139500.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4A01G035800.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4B01G268600.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4D01G267900.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4A01G294600.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS4B01G019100.2	AT4G19640.1	17468262
AT2G27600.1	TraesCS4D01G017300.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS5B01G014400.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS5D01G022200.2	AT4G19640.1	17468262
AT2G27600.1	TraesCS7A01G223600.1	AT4G26750.1	17468262
AT2G27600.1	TraesCS7B01G190400.1	AT4G26750.1	17468262
AT2G27600.1	TraesCS7D01G225200.1	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G122900.1	Wheat	cytosol	97.71	97.71
TraesCS6A01G133300.1	Wheat	cytosol	97.48	97.26
Os02t0159900-01	Rice	plasma membrane	80.09	80.83
GSMUA_Achr4P24320_001	Banana	cytosol	71.85	76.96
GSMUA_Achr2P22550_001	Banana	cytosol	71.4	75.73
GSMUA_Achr3P01430_001	Banana	cytosol	70.71	75.18
CDX93578	Canola	cytosol	73.46	74.65
Bra018640.1-P	Field mustard	cytosol	73.46	74.65
KRH26619	Soybean	nucleus	74.37	74.54
KRH25197	Soybean	cytosol	73.68	74.19
CDX95077	Canola	cytosol	73.0	74.01
KRH30451	Soybean	cytosol	73.46	73.96
KRH22691	Soybean	cytosol	69.11	73.84
TraesCS3B01G065200.1	Wheat	cytosol	73.68	73.52
CDX83275	Canola	cytosol	72.77	73.44
Bra012009.1-P	Field mustard	cytosol	72.77	73.44
CDX71438	Canola	cytosol	72.08	73.43
CDY04504	Canola	cytosol	72.54	73.38
Solyc11g007170.1.1	Tomato	cytosol	67.73	73.27
Bra000503.1-P	Field mustard	cytosol	72.54	73.21
CDY31186	Canola	cytosol	72.54	73.04
VIT_13s0106g00490.t01	Wine grape	cytosol	72.31	72.81
AT2G27600.1	Thale cress	cytosol	72.08	72.41
PGSC0003DMT400050194	Potato	cytosol	71.85	72.18
TraesCS3B01G305600.2	Wheat	cytosol	32.49	35.95
TraesCS3B01G329000.2	Wheat	cytosol	30.66	34.63
TraesCS1B01G120800.1	Wheat	cytosol	17.85	30.83
TraesCS3B01G299100.1	Wheat	cytosol	33.64	28.21
TraesCS7B01G287800.1	Wheat	golgi	24.03	28.15
TraesCS5B01G110300.1	Wheat	nucleus	32.95	20.93
TraesCS7B01G028300.1	Wheat	cytosol	26.77	14.83
TraesCS3B01G178200.1	Wheat	cytosol, vacuole	27.46	14.29
TraesCS3B01G254800.2	Wheat	cytosol	26.32	14.29
TraesCS1B01G455200.1	Wheat	mitochondrion	25.63	13.11
TraesCS6B01G333700.1	Wheat	mitochondrion	26.77	11.95
TraesCS7B01G089500.1	Wheat	mitochondrion	26.09	11.72
TraesCS2B01G132900.3	Wheat	cytosol, plastid	26.32	10.45
TraesCS4B01G155600.1	Wheat	cytosol	26.09	10.36
TraesCS4B01G126300.7	Wheat	nucleus	28.6	9.94

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:19.4.2.2	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6B01G161700	EnsemblPlants:TraesCS6B01G161700.1	InterPro:Vps4_C	TIGR:cd00009	SEG:seg

Description

No Description!

Coordinates

chr6B:+:166117599..166120243

Molecular Weight (calculated)

47981.8 Da

IEP (calculated)

6.729

GRAVY (calculated)

-0.438

Length

437 amino acids

Sequence
(BLAST)

001: MYGAMKDQAV ALVRRAVQED DAGDYAAALQ HYVQALDYFA AHLRYEHNPR VRDAIAARLP GYVARAEEIR ALLDGNPAPC GPAGNGVAAA TRKKDPRGGG
101: DEDDERASER TKLRAGLHSA IVSEKPNVRW SDVAGLDGAK QALQEAVVLP VRFPQFFTGK RRPWRAFLLY GPAGTGKSYL AKAVATEADS TFFSISSSDL
201: LSKWMGESEK LVANLFEMAR ENAPSIIFID EIDSLCGQRG EGNESESSRR VKTELLVQMQ GVGHNDDKVL VLAATNTPYA LDQAVRRRFD KRIYIPLPDL
301: KARQRMLKVH LGDTPHSLTK SDFESVAHRT DGFSGSDIAV CVKDVLFEPI RKTQDAMFFF RSEDGGGGTW TPCGPKQPGA VQTTMEELAA EGMADQITPP
401: PISRTDFDKV LARQRPTVSK AELGVYTRFT KEFGEEG

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.