Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G268600.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS4D01G267900.1 | Wheat | cytosol | 83.42 | 99.4 |
| Os03t0151900-01 | Rice | plasma membrane | 91.46 | 91.46 |
| OQU93218 | Sorghum | plastid | 90.45 | 90.0 |
| GSMUA_Achr1P03160_001 | Banana | cytosol | 74.37 | 84.09 |
| TraesCS1A01G140700.1 | Wheat | cytosol | 63.82 | 83.01 |
| Zm00001d048410_P004 | Maize | plastid | 85.93 | 80.66 |
| VIT_13s0019g04680.t01 | Wine grape | cytosol | 80.4 | 80.0 |
| PGSC0003DMT400019238 | Potato | cytosol | 77.39 | 77.0 |
| GSMUA_Achr5P10670_001 | Banana | cytosol | 74.37 | 76.68 |
| KRG91957 | Soybean | cytosol | 76.88 | 76.5 |
| Solyc11g008430.1.1 | Tomato | cytosol | 76.88 | 76.5 |
| AT3G54840.1 | Thale cress | cytosol | 77.39 | 76.24 |
| Bra014785.1-P | Field mustard | cytosol, plastid | 75.38 | 75.38 |
| HORVU4Hr1G072020.1 | Barley | cytosol | 97.99 | 75.0 |
| CDY55834 | Canola | cytosol, plastid | 75.38 | 73.89 |
| CDY61658 | Canola | cytosol | 74.87 | 73.76 |
| CDX78272 | Canola | cytosol | 74.87 | 73.4 |
| KRH34819 | Soybean | cytosol | 73.87 | 71.71 |
| GSMUA_Achr4P29310_001 | Banana | plastid | 76.38 | 69.41 |
| Bra007104.1-P | Field mustard | endoplasmic reticulum | 73.87 | 52.88 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 52.26 | 50.73 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 64.32 | 47.58 |
| TraesCS2A01G236600.1 | Wheat | cytosol | 36.68 | 35.1 |
| TraesCS4A01G407500.1 | Wheat | cytosol | 37.69 | 35.05 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF618 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS4A01G035800 |
| EnsemblPlants:TraesCS4A01G035800.1 | TIGR:cd01860 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:-:28560515..28566360
Molecular Weight (calculated)
21415.3 Da
IEP (calculated)
7.409
GRAVY (calculated)
-0.194
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCSSSVPAR STGGLNNING SSSAADSNDL RAKLVLLGDS GVGKSCIVLR FVRGQFDPTS KVTVGASFLS QTLALEDSTI VKFEIWDTAG QERYAALAPL
101: YYRGAAAAVV VYDITSPESF KKAQYWVKEL QKHGSPGIVM VLVGNKADLH ESRSVPSQEA QEYAEKNSML FMETSAKTSD NINQVFEEIA KRLPKPTAS
101: YYRGAAAAVV VYDITSPESF KKAQYWVKEL QKHGSPGIVM VLVGNKADLH ESRSVPSQEA QEYAEKNSML FMETSAKTSD NINQVFEEIA KRLPKPTAS
001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
Arabidopsis Description
RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.