Factsheet for PGSC0003DMT400019238

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400050194
PGSC0003DMT400070819
PGSC0003DMT400076980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	PGSC0003DMT400070819	AT1G71830.1	16621602
AT3G54840.1	PGSC0003DMT400050194	AT2G27600.1	17468262
AT3G54840.1	PGSC0003DMT400076980	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008430.1.1	Tomato	cytosol	98.5	98.5
VIT_13s0019g04680.t01	Wine grape	cytosol	90.5	90.5
KRG91957	Soybean	cytosol	86.0	86.0
AT3G54840.1	Thale cress	cytosol	86.0	85.15
TraesCS4D01G267900.1	Wheat	cytosol	71.0	85.03
GSMUA_Achr1P03160_001	Banana	cytosol	74.5	84.66
Bra014785.1-P	Field mustard	cytosol, plastid	83.5	83.92
TraesCS1A01G140700.1	Wheat	cytosol	64.0	83.66
CDY61658	Canola	cytosol	83.0	82.18
KRH34819	Soybean	cytosol	84.0	81.95
CDY55834	Canola	cytosol, plastid	82.0	80.79
CDX78272	Canola	cytosol	81.5	80.3
OQU93218	Sorghum	plastid	80.0	80.0
Os03t0151900-01	Rice	plasma membrane	79.5	79.9
TraesCS4B01G268600.1	Wheat	plastid	77.0	77.39
TraesCS4A01G035800.1	Wheat	plastid	77.0	77.39
GSMUA_Achr5P10670_001	Banana	cytosol	74.5	77.2
TraesCS1B01G157100.1	Wheat	cytosol, plastid	77.0	77.0
TraesCS1D01G139500.1	Wheat	cytosol, plastid	76.0	76.0
Zm00001d048410_P004	Maize	plastid	76.0	71.7
GSMUA_Achr4P29310_001	Banana	plastid	78.0	71.23
Os10t0441800-01	Rice	plasma membrane	78.5	62.8
HORVU4Hr1G072020.1	Barley	cytosol	76.5	58.85
Bra007104.1-P	Field mustard	endoplasmic reticulum	80.5	57.91
PGSC0003DMT400055259	Potato	cytosol, plastid	54.5	54.5
CDY02896	Canola	endoplasmic reticulum, golgi	72.5	53.9
PGSC0003DMT400050774	Potato	cytosol	52.5	52.5
PGSC0003DMT400004322	Potato	cytosol	40.5	38.94
PGSC0003DMT400056111	Potato	cytosol	39.0	37.68
PGSC0003DMT400018619	Potato	cytosol	38.5	37.2

Protein Annotations

EntrezGene:102600546	MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0016787	UniProt:M1ABT4	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400007437	PGSC:PGSC0003DMG400007437	EnsemblPlants:PGSC0003DMT400019238	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029483FB	RefSeq:XP_006361677.1	SEG:seg	:

Description

RAB5B [Source:PGSC_GENE;Acc:PGSC0003DMG400007437]

Coordinates

chr11:+:3618812..3625897

Molecular Weight (calculated)

21491.5 Da

IEP (calculated)

7.187

GRAVY (calculated)

-0.174

Length

200 amino acids

Sequence
(BLAST)

001: MGCASSAADR NSGRAAGLNP DNGGAIDPKN LKVKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTIALQDST TVKFEIWDTA GQERYAALAP
101: LYYRGAAVAV VVYDITSPES FAKAQYWVKE LQKHGSPDIV MALVGNKADL NEKREVTTQD GIDCAEKNGM FFIETSAKTA DNINQLFEEI AKRLPRPTAA

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.