CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91762
KRH05482
KRH22691
KRH25197
KRH26619
KRH30451
KRH35013
KRH44162
KRH47134
KRH70218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	KRG91762	AT1G71830.1	16621602
AT3G54840.1	KRH35013	AT1G71830.1	16621602
AT3G54840.1	KRH70218	AT1G71830.1	16621602
AT3G54840.1	KRH22691	AT2G27600.1	17468262
AT3G54840.1	KRH25197	AT2G27600.1	17468262
AT3G54840.1	KRH26619	AT2G27600.1	17468262
AT3G54840.1	KRH30451	AT2G27600.1	17468262
AT3G54840.1	KRH05482	AT4G33000.1	17825054
AT3G54840.1	KRH44162	AT4G33000.1	17825054
AT3G54840.1	KRH47134	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34819	Soybean	cytosol	94.5	92.2
VIT_13s0019g04680.t01	Wine grape	cytosol	91.0	91.0
Solyc11g008430.1.1	Tomato	cytosol	86.5	86.5
PGSC0003DMT400019238	Potato	cytosol	86.0	86.0
AT3G54840.1	Thale cress	cytosol	86.5	85.64
Bra014785.1-P	Field mustard	cytosol, plastid	84.5	84.92
GSMUA_Achr1P03160_001	Banana	cytosol	74.0	84.09
TraesCS4D01G267900.1	Wheat	cytosol	70.0	83.83
CDY55834	Canola	cytosol, plastid	84.5	83.25
CDX78272	Canola	cytosol	84.0	82.76
CDY61658	Canola	cytosol	83.5	82.67
TraesCS1A01G140700.1	Wheat	cytosol	62.5	81.7
OQU93218	Sorghum	plastid	79.5	79.5
Os03t0151900-01	Rice	plasma membrane	79.0	79.4
TraesCS4B01G268600.1	Wheat	plastid	76.5	76.88
TraesCS4A01G035800.1	Wheat	plastid	76.5	76.88
GSMUA_Achr5P10670_001	Banana	cytosol	74.0	76.68
TraesCS1B01G157100.1	Wheat	cytosol, plastid	76.0	76.0
TraesCS1D01G139500.1	Wheat	cytosol, plastid	75.5	75.5
Zm00001d048410_P004	Maize	plastid	76.5	72.17
GSMUA_Achr4P29310_001	Banana	plastid	78.0	71.23
Os10t0441800-01	Rice	plasma membrane	80.0	64.0
Bra007104.1-P	Field mustard	endoplasmic reticulum	83.0	59.71
HORVU4Hr1G072020.1	Barley	cytosol	76.0	58.46
KRG98019	Soybean	cytosol	55.5	55.5
CDY02896	Canola	endoplasmic reticulum, golgi	73.5	54.65
KRH09851	Soybean	cytosol, mitochondrion, plastid	51.5	51.5
KRH23467	Soybean	cytosol	28.5	50.89
KRH60288	Soybean	mitochondrion	48.0	48.24
KRH20053	Soybean	endoplasmic reticulum	55.5	47.64
KRH41580	Soybean	cytosol	46.0	47.42
KRH77258	Soybean	endoplasmic reticulum	41.0	39.61
KRH28235	Soybean	cytosol	41.0	39.61
KRH43179	Soybean	cytosol	41.0	39.61
KRH59334	Soybean	endoplasmic reticulum	40.5	39.13
KRH04283	Soybean	cytosol	39.5	38.35
KRH57563	Soybean	cytosol	39.5	38.35
KRG97576	Soybean	cytosol	39.5	38.16
KRH31293	Soybean	cytosol	32.5	36.52
KRH77257	Soybean	endoplasmic reticulum	29.0	32.95
KRH28236	Soybean	cytosol	22.5	9.49

Protein Annotations

EntrezGene:100500544	MapMan:22.8.1.6	Gene3D:3.40.50.300	EMBL:ACUP02012720	EnsemblPlantsGene:GLYMA_20G182400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1NHI2	EnsemblPlants:KRG91957	ProteinID:KRG91957	ProteinID:KRG91957.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233DA6C

Description

hypothetical protein

Coordinates

chr20:+:42044020..42050361

Molecular Weight (calculated)

21869.9 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.289

Length

200 amino acids

Sequence
(BLAST)

001: MGCGSSLPDR DSRQLGRPNS ENGGGQDAKN LRVKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTIALQDST TVKFEIWDTA GQERYAALAP
101: LYYRGAAVAV IVYDITSPES FSKAQYWVKE LQKHGSPDIV MALVGNKADL LEKREVAVQD GTDYAEKNDM FFIETSAKTA DNINELFEEI AKRLPRPSVS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.