CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43179	Soybean	cytosol	99.03	99.03
KRH31293	Soybean	cytosol	84.06	97.75
KRG97576	Soybean	cytosol	96.62	96.62
PGSC0003DMT400056111	Potato	cytosol	93.72	93.72
VIT_00s0665g00040.t01	Wine grape	extracellular	80.19	93.26
Solyc03g078570.2.1	Tomato	cytosol	93.24	93.24
GSMUA_Achr6P10400_001	Banana	cytosol	90.34	90.34
AT2G22290.1	Thale cress	cytosol	89.86	89.86
GSMUA_Achr2P22200_001	Banana	cytosol	89.86	89.86
Bra038535.1-P	Field mustard	cytosol	88.89	88.89
CDY13772	Canola	cytosol	88.89	88.89
KRH28235	Soybean	cytosol	87.92	87.92
KRH77258	Soybean	endoplasmic reticulum	87.92	87.92
KRH04283	Soybean	cytosol	86.47	86.89
KRH57563	Soybean	cytosol	86.47	86.89
Zm00001d006905_P001	Maize	mitochondrion	86.96	86.12
EER97564	Sorghum	cytosol	86.96	86.12
Os03t0191400-01	Rice	plasma membrane	82.13	79.07
KXG39985	Sorghum	cytosol	79.71	77.46
TraesCS4D01G305100.1	Wheat	cytosol	79.23	76.64
TraesCS4A01G407500.1	Wheat	cytosol	78.74	76.17
TraesCS4B01G306900.1	Wheat	cytosol	78.26	75.7
KRH77257	Soybean	endoplasmic reticulum	61.84	72.73
Zm00001d028012_P001	Maize	cytosol, extracellular	68.12	63.51
CDX76936	Canola	cytosol	82.13	61.82
HORVU4Hr1G078690.2	Barley	plastid	78.26	52.77
KRG91957	Soybean	cytosol	39.13	40.5
KRH60288	Soybean	mitochondrion	38.16	39.7
KRH23467	Soybean	cytosol	21.26	39.29
KRH34819	Soybean	cytosol	38.65	39.02
KRH09851	Soybean	cytosol, mitochondrion, plastid	37.68	39.0
KRG98019	Soybean	cytosol	37.68	39.0
KRH41580	Soybean	cytosol	35.27	37.63
KRH20053	Soybean	endoplasmic reticulum	37.68	33.48
KRH28236	Soybean	cytosol	57.0	24.89

Protein Annotations

EntrezGene:100794989	MapMan:22.8.1.8	Gene3D:3.40.50.300	EMBL:ACUP02003316	EnsemblPlantsGene:GLYMA_05G178300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810
GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0016787	GO:GO:0042147	UniProt:I1K4J2
EnsemblPlants:KRH59334	ProteinID:KRH59334	ProteinID:KRH59334.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF630	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002339E1A

Description

hypothetical protein

Coordinates

chr5:-:36651081..36654179

Molecular Weight (calculated)

23177.7 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.225

Length

207 amino acids

Sequence
(BLAST)

001: MATVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: NKWVEEVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDAK SREFGIMFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK PTVNSSQTEQ
201: QGGGCSC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.