Factsheet for Zm00001d028012_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39985	Sorghum	cytosol	77.03	80.28
Os03t0191400-01	Rice	plasma membrane	72.52	74.88
TraesCS4A01G407500.1	Wheat	cytosol	72.07	74.77
TraesCS4D01G305100.1	Wheat	cytosol	71.62	74.3
TraesCS4B01G306900.1	Wheat	cytosol	71.17	73.83
GSMUA_Achr2P22200_001	Banana	cytosol	64.86	69.57
KRH59334	Soybean	endoplasmic reticulum	63.51	68.12
KRH43179	Soybean	cytosol	63.51	68.12
Solyc03g078570.2.1	Tomato	cytosol	63.06	67.63
PGSC0003DMT400056111	Potato	cytosol	63.06	67.63
GSMUA_Achr6P10400_001	Banana	cytosol	63.06	67.63
KRG97576	Soybean	cytosol	62.61	67.15
AT5G10260.1	Thale cress	cytosol	62.16	66.67
Solyc05g051570.2.1	Tomato	nucleus	62.16	66.67
PGSC0003DMT400018619	Potato	cytosol	62.16	66.67
Zm00001d006433_P001	Maize	plasma membrane	62.16	66.35
KRH31293	Soybean	cytosol	52.25	65.17
Zm00001d006905_P001	Maize	mitochondrion	61.26	65.07
CDX96987	Canola	cytosol	60.36	65.05
CDX69850	Canola	cytosol	60.36	65.05
Bra009046.1-P	Field mustard	cytosol	60.36	65.05
CDY13772	Canola	cytosol	60.36	64.73
CDX81166	Canola	cytosol	60.36	64.73
CDX78373	Canola	cytosol	60.36	64.73
Bra038535.1-P	Field mustard	cytosol	60.36	64.73
Bra006054.1-P	Field mustard	cytosol	60.36	64.73
AT2G22290.1	Thale cress	cytosol	60.36	64.73
VIT_00s0665g00040.t01	Wine grape	extracellular	50.45	62.92
Zm00001d021551_P002	Maize	cytosol	64.86	56.69
HORVU4Hr1G078690.2	Barley	plastid	70.72	51.14
CDX76936	Canola	cytosol	57.66	46.55
Zm00001d024612_P011	Maize	mitochondrion	48.65	37.5
Zm00001d031179_P001	Maize	extracellular, mitochondrion	30.63	33.33
Zm00001d036973_P001	Maize	cytosol	10.36	33.33
Zm00001d013583_P001	Maize	cytosol	29.73	32.51
Zm00001d010555_P001	Maize	cytosol	13.06	29.0
Zm00001d048410_P004	Maize	plastid	26.58	27.83
Zm00001d034949_P001	Maize	extracellular, mitochondrion	29.73	26.61

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6JR96	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	ProteinID:ONL94475.1	InterPro:P-loop_NTPase
PFAM:PF00071	PFAM:PF08477	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTPase	UniParc:UPI000844F9A2
EnsemblPlantsGene:Zm00001d028012	EnsemblPlants:Zm00001d028012_P001	EnsemblPlants:Zm00001d028012_T001	SEG:seg	:	:

Description

Ras-related protein Rab-6A

Coordinates

chr1:+:20300349..20303168

Molecular Weight (calculated)

23740.5 Da

IEP (calculated)

7.131

GRAVY (calculated)

0.091

Length

222 amino acids

Sequence
(BLAST)

001: MAVVSALAKY KLVFLGNQAV GKTAIITRFM YDKFDDTYQA GSLLLNLSSK SDSDLWVRAA AAAAAISAPP CVMQATIGID FLSKTMYLED RTVRLQLWDT
101: AGQERFRSLI PSYIRDSSVA VIVYDVTGIL IFCSLDVTRK VSTDEGEAKA QEHGAMFMET SAKAGFNVKP LFRKIAGSLP GLDALSSGKQ EDMVDINLRP
201: ASGSSASGAA AQLEQKSGGC SC

Best Arabidopsis Sequence Match ( AT2G22290.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VANRLSFLNT
101: SKWIEEVRNE RAGDVIIVLV GNKTDLVEKR QVSIEEGDSK GREYGVMFIE TSAKAGFNIK PLFRKIAAAL PGMESYSNTK NEDMVDVNLK PTSNSSQGDQ
201: QGGACSC

Arabidopsis Description

RABH1DRas-related protein RABH1d [Source:UniProtKB/Swiss-Prot;Acc:Q9SID8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.