Factsheet for Zm00001d031179_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008596_P005
Zm00001d039904_P006
Zm00001d044285_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	Zm00001d008596_P005	AT2G27600.1	17468262
AT4G19640.1	Zm00001d039904_P006	AT2G27600.1	17468262
AT4G19640.1	Zm00001d044285_P003	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24102	Sorghum	cytosol	96.57	96.57
Zm00001d036973_P001	Maize	cytosol	32.35	95.65
Zm00001d013583_P001	Maize	cytosol	91.67	92.12
Os12t0631100-01	Rice	plasma membrane	88.73	89.16
HORVU5Hr1G002970.1	Barley	plastid	88.73	86.6
TraesCS5D01G022200.2	Wheat	golgi	87.75	85.65
TraesCS5B01G014400.1	Wheat	plastid	86.76	84.69
GSMUA_Achr7P16440_001	Banana	cytosol	80.88	81.68
Solyc02g069370.2.1	Tomato	plastid	78.92	80.5
CDY23153	Canola	cytosol	78.92	80.5
Bra027593.1-P	Field mustard	cytosol	78.43	80.4
CDY13065	Canola	cytosol	78.43	80.0
CDX82579	Canola	cytosol	78.43	80.0
GSMUA_Achr9P10010_001	Banana	cytosol	79.9	79.51
CDY39412	Canola	cytosol	77.94	79.5
Bra025091.1-P	Field mustard	cytosol	77.94	79.5
AT4G19640.1	Thale cress	cytosol	77.45	79.0
CDX99356	Canola	cytosol	76.96	78.11
Bra013410.1-P	Field mustard	cytosol	76.47	78.0
CDX78949	Canola	cytosol	76.47	77.61
KRG98019	Soybean	cytosol	75.98	77.5
PGSC0003DMT400050774	Potato	cytosol	74.51	76.0
AT5G45130.2	Thale cress	endoplasmic reticulum	75.98	74.52
PGSC0003DMT400055259	Potato	cytosol, plastid	72.06	73.5
Zm00001d034949_P001	Maize	extracellular, mitochondrion	87.75	72.18
GSMUA_Achr6P31600_001	Banana	cytosol	71.08	71.08
KRH20053	Soybean	endoplasmic reticulum	75.98	66.52
VIT_04s0079g00760.t01	Wine grape	cytosol	68.14	60.7
CDX78945	Canola	cytosol	14.71	58.82
Zm00001d010555_P001	Maize	cytosol	27.45	56.0
CDY09323	Canola	extracellular, plastid, vacuole	29.41	52.63
Zm00001d048410_P004	Maize	plastid	50.98	49.06
Zm00001d006905_P001	Maize	mitochondrion	38.24	37.32
Zm00001d006433_P001	Maize	plasma membrane	36.76	36.06
Zm00001d028012_P001	Maize	cytosol, extracellular	33.33	30.63
Zm00001d021551_P002	Maize	cytosol	36.76	29.53
Zm00001d024612_P011	Maize	mitochondrion	23.53	16.67

Protein Annotations

EntrezGene:100191530	MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:B4F944	EMBL:BT033632	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
ProteinID:ONM02281.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00017B6235	EnsemblPlantsGene:Zm00001d031179	EnsemblPlants:Zm00001d031179_P001
EnsemblPlants:Zm00001d031179_T001	:	:	:	:	:

Description

ras-related protein RHN1 ras-related protein RHN1

Coordinates

chr1:-:181314460..181317451

Molecular Weight (calculated)

22087.2 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.163

Length

204 amino acids

Sequence
(BLAST)

001: MAATAGGNKI RNAKLVLLGD VGAGKSSLVL RFVKGQFVEF QESTIGAAFF SQTLAVNDET VKFEIWDTAG QERYHSLAPM YYRGAAAAIV VYDITNAASF
101: TRAKKWVQEL QAQGNSNTIV ALAGNKADLL DTRQVSADEA KAYAQENGLF FMETSAKTAT NVNDVFYEIA KKLLQGQQVQ NPQGGMVLNQ RPPERMVSSS
201: SCCA

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.