Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13065 | Canola | cytosol | 89.42 | 93.0 |
| CDY23153 | Canola | cytosol | 89.42 | 93.0 |
| Bra027593.1-P | Field mustard | cytosol | 88.46 | 92.46 |
| CDX82579 | Canola | cytosol | 87.98 | 91.5 |
| Bra025091.1-P | Field mustard | cytosol | 87.5 | 91.0 |
| CDY39412 | Canola | cytosol | 87.5 | 91.0 |
| AT4G19640.1 | Thale cress | cytosol | 83.65 | 87.0 |
| Solyc02g069370.2.1 | Tomato | plastid | 78.37 | 81.5 |
| KRG98019 | Soybean | cytosol | 75.48 | 78.5 |
| Zm00001d013583_P001 | Maize | cytosol | 74.52 | 76.35 |
| Os03t0666500-01 | Rice | plasma membrane | 74.52 | 76.35 |
| EER93694 | Sorghum | cytosol | 74.52 | 76.35 |
| Zm00001d031179_P001 | Maize | extracellular, mitochondrion | 74.52 | 75.98 |
| KXG24102 | Sorghum | cytosol | 74.52 | 75.98 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 74.52 | 75.61 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 74.52 | 75.61 |
| Os12t0631100-01 | Rice | plasma membrane | 72.6 | 74.38 |
| GSMUA_Achr7P16440_001 | Banana | cytosol | 72.12 | 74.26 |
| PGSC0003DMT400050774 | Potato | cytosol | 71.15 | 74.0 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 71.15 | 74.0 |
| HORVU5Hr1G002970.1 | Barley | plastid | 74.04 | 73.68 |
| TraesCS5D01G022200.2 | Wheat | golgi | 73.08 | 72.73 |
| TraesCS5B01G014400.1 | Wheat | plastid | 72.6 | 72.25 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 74.52 | 72.09 |
| GSMUA_Achr9P10010_001 | Banana | cytosol | 70.67 | 71.71 |
| KRH20053 | Soybean | endoplasmic reticulum | 75.96 | 67.81 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 74.52 | 64.85 |
| GSMUA_Achr6P31600_001 | Banana | cytosol | 62.98 | 64.22 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 73.08 | 61.29 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 66.35 | 60.26 |
| AT3G54840.1 | Thale cress | cytosol | 48.08 | 49.51 |
| AT2G44610.1 | Thale cress | cytosol | 37.98 | 37.98 |
| AT5G10260.1 | Thale cress | cytosol | 36.06 | 36.23 |
| AT2G22290.1 | Thale cress | cytosol | 35.58 | 35.75 |
| AT5G64990.2 | Thale cress | cytosol | 35.58 | 34.74 |
| AT4G39890.1 | Thale cress | cytosol | 35.58 | 34.58 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | EntrezGene:834549 | UniProt:A0A1P8BA31 | ProteinID:ANM68454.1 | ArrayExpress:AT5G45130 |
| EnsemblPlantsGene:AT5G45130 | RefSeq:AT5G45130 | TAIR:AT5G45130 | RefSeq:AT5G45130-TAIR-G | EnsemblPlants:AT5G45130.2 | Symbol:ATRAB5A |
| Unigene:At.23631 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | RefSeq:NP_001330210.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000848D22B |
Description
ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
Coordinates
chr5:+:18244263..18246450
Molecular Weight (calculated)
22714.3 Da
IEP (calculated)
4.867
GRAVY (calculated)
0.098
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVIELEIAW FISIKLGFGV KVLLGDVGAG KSSLVLRFVK DQFVEFQEST IGAAFFSQTL AVNDATVKFE IWDTAGQERY HSLAPMYYRG AAAAIIVFDI
101: TNQASFERAK KWVQELQAQG NPNMVMALAG NKADLLDARK VSAEEAEIYA QENSLFFMET SAKTATNVKD IFYEIAKRLP RVQPAENPTG MVLPNGPGAT
201: AVSSSCCA
101: TNQASFERAK KWVQELQAQG NPNMVMALAG NKADLLDARK VSAEEAEIYA QENSLFFMET SAKTATNVKD IFYEIAKRLP RVQPAENPTG MVLPNGPGAT
201: AVSSSCCA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.