Factsheet for Zm00001d034949_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008596_P005
Zm00001d039904_P006
Zm00001d044285_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	Zm00001d008596_P005	AT2G27600.1	17468262
AT4G19640.1	Zm00001d039904_P006	AT2G27600.1	17468262
AT4G19640.1	Zm00001d044285_P003	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93694	Sorghum	cytosol	77.82	95.07
Zm00001d013583_P001	Maize	cytosol	76.61	93.6
Os03t0666500-01	Rice	plasma membrane	73.39	89.66
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.58	87.8
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.58	87.8
Zm00001d031179_P001	Maize	extracellular, mitochondrion	72.18	87.75
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.58	83.72
GSMUA_Achr7P16440_001	Banana	cytosol	67.34	82.67
Solyc02g069370.2.1	Tomato	plastid	64.92	80.5
CDY13065	Canola	cytosol	64.11	79.5
HORVU4Hr1G002980.2	Barley	cytosol	76.21	79.08
CDY23153	Canola	cytosol	63.71	79.0
GSMUA_Achr9P10010_001	Banana	cytosol	64.92	78.54
Bra025091.1-P	Field mustard	cytosol	63.31	78.5
CDX82579	Canola	cytosol	63.31	78.5
AT4G19640.1	Thale cress	cytosol	63.31	78.5
CDY39412	Canola	cytosol	63.31	78.5
Bra027593.1-P	Field mustard	cytosol	62.9	78.39
Bra013410.1-P	Field mustard	cytosol	62.5	77.5
KRG98019	Soybean	cytosol	62.5	77.5
CDX78949	Canola	cytosol	62.5	77.11
CDX99356	Canola	cytosol	62.5	77.11
Zm00001d036973_P001	Maize	cytosol	21.37	76.81
PGSC0003DMT400050774	Potato	cytosol	59.68	74.0
PGSC0003DMT400055259	Potato	cytosol, plastid	59.27	73.5
AT5G45130.2	Thale cress	endoplasmic reticulum	61.29	73.08
GSMUA_Achr6P31600_001	Banana	cytosol	58.47	71.08
KRH20053	Soybean	endoplasmic reticulum	62.5	66.52
VIT_04s0079g00760.t01	Wine grape	cytosol	55.24	59.83
CDX78945	Canola	cytosol	11.29	54.9
CDY09323	Canola	extracellular, plastid, vacuole	22.58	49.12
Zm00001d048410_P004	Maize	plastid	40.73	47.64
Zm00001d010555_P001	Maize	cytosol	18.95	47.0
Zm00001d006905_P001	Maize	mitochondrion	31.05	36.84
Zm00001d006433_P001	Maize	plasma membrane	29.84	35.58
Zm00001d028012_P001	Maize	cytosol, extracellular	26.61	29.73
Zm00001d021551_P002	Maize	cytosol	29.84	29.13
Zm00001d024612_P011	Maize	mitochondrion	18.95	16.32

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A0A1D6LCZ4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	ProteinID:ONM11898.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002214323	EnsemblPlantsGene:Zm00001d034949	EnsemblPlants:Zm00001d034949_P001	EnsemblPlants:Zm00001d034949_T001

Description

GTP-binding protein homolog1 GTP-binding protein homolog1

Coordinates

chr1:-:306490318..306502810

Molecular Weight (calculated)

27088.1 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.274

Length

248 amino acids

Sequence
(BLAST)

001: MNHIPPTEHG NGGSKQLEIP QPGSFSCGLI SSEARPQFRH QPSNSMAANF GNKIRNAKLV LLGDVGAGKS SLVLRFVKGQ FVEFQESTIG AAFFSQTLAV
101: NDETVKFEIW DTAGQERYHS LAPMYYRGAA AAIVVYDITN PASFTRAKKW VQELQAQGNP NTIVALAGNK VDMLDARHVA VEEAKTYAQE NGLFFMETSA
201: KTAINVNDIF YEIAKRLLQG QEAPSPQAGI VLNQRPDERM VSTSSCCS

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.