Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400050194 | |
| PGSC0003DMT400076980 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G19640.1 | PGSC0003DMT400050194 | AT2G27600.1 | 17468262 |
| AT4G19640.1 | PGSC0003DMT400076980 | AT4G33000.1 | 17825054 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g081380.2.1 | Tomato | plastid | 99.5 | 99.5 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 88.5 | 88.5 |
| KRG98019 | Soybean | cytosol | 88.5 | 88.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.5 | 79.86 |
| CDX82579 | Canola | cytosol | 78.0 | 78.0 |
| Bra025091.1-P | Field mustard | cytosol | 77.5 | 77.5 |
| CDY39412 | Canola | cytosol | 77.5 | 77.5 |
| CDY13065 | Canola | cytosol | 77.0 | 77.0 |
| CDY23153 | Canola | cytosol | 77.0 | 77.0 |
| Bra027593.1-P | Field mustard | cytosol | 76.0 | 76.38 |
| KRH20053 | Soybean | endoplasmic reticulum | 88.5 | 75.97 |
| Os03t0666500-01 | Rice | plasma membrane | 76.0 | 74.88 |
| Zm00001d031179_P001 | Maize | extracellular, mitochondrion | 76.0 | 74.51 |
| AT4G19640.1 | Thale cress | cytosol | 74.5 | 74.5 |
| Bra013410.1-P | Field mustard | cytosol | 74.5 | 74.5 |
| CDX99356 | Canola | cytosol | 74.5 | 74.13 |
| CDX78949 | Canola | cytosol | 74.5 | 74.13 |
| KXG24102 | Sorghum | cytosol | 75.5 | 74.02 |
| EER93694 | Sorghum | cytosol | 75.0 | 73.89 |
| Zm00001d013583_P001 | Maize | cytosol | 75.0 | 73.89 |
| Os12t0631100-01 | Rice | plasma membrane | 74.5 | 73.4 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 75.0 | 73.17 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 75.0 | 73.17 |
| HORVU5Hr1G002970.1 | Barley | plastid | 75.0 | 71.77 |
| TraesCS5B01G014400.1 | Wheat | plastid | 74.5 | 71.29 |
| AT5G45130.2 | Thale cress | endoplasmic reticulum | 74.0 | 71.15 |
| TraesCS5D01G022200.2 | Wheat | golgi | 74.0 | 70.81 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 75.0 | 69.77 |
| GSMUA_Achr4P29680_001 | Banana | cytosol | 78.5 | 67.09 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 75.5 | 65.94 |
| GSMUA_Achr1P02060_001 | Banana | cytosol | 78.5 | 65.69 |
| GSMUA_Achr2P10990_001 | Banana | cytosol | 79.0 | 65.56 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 75.0 | 62.76 |
| CDX78945 | Canola | cytosol | 16.0 | 62.75 |
| Zm00001d036973_P001 | Maize | cytosol | 21.5 | 62.32 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 74.0 | 59.68 |
| PGSC0003DMT400019238 | Potato | cytosol | 52.5 | 52.5 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 29.5 | 51.75 |
| Zm00001d010555_P001 | Maize | cytosol | 22.0 | 44.0 |
| PGSC0003DMT400004322 | Potato | cytosol | 37.5 | 36.06 |
| PGSC0003DMT400018619 | Potato | cytosol | 37.0 | 35.75 |
| PGSC0003DMT400056111 | Potato | cytosol | 36.5 | 35.27 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:M1BQU5 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| EnsemblPlantsGene:PGSC0003DMG400019719 | PGSC:PGSC0003DMG400019719 | EnsemblPlants:PGSC0003DMT400050774 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF622 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000294C853 | : | : |
Description
GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019719]
Coordinates
chr2:-:36997248..37002610
Molecular Weight (calculated)
21846.9 Da
IEP (calculated)
6.532
GRAVY (calculated)
-0.204
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGHTNLN AKLVLLGDMG AGKSSLVIRF IKGQFLEFQE STIGAAFFSS TLAVNNATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DITSSDSFAK
101: AKKWVQELQK QGNSNMIMAL AGNKADLEDR RNVPAEEARL YAEENGLFFM ETSAKTAVNV NDIFYEIAKR LPTAQPTQNP AGMVLENRPA EGSRTASCCT
101: AKKWVQELQK QGNSNMIMAL AGNKADLEDR RNVPAEEARL YAEENGLFFM ETSAKTAVNV NDIFYEIAKR LPTAQPTQNP AGMVLENRPA EGSRTASCCT
001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA
Arabidopsis Description
ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.