Factsheet for GSMUA_Achr4P29680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	52.56	85.42
KRG98019	Soybean	cytosol	72.22	84.5
Solyc02g036450.2.1	Tomato	cytosol, plastid	67.95	79.5
PGSC0003DMT400055259	Potato	cytosol, plastid	67.52	79.0
PGSC0003DMT400050774	Potato	cytosol	67.09	78.5
Solyc02g081380.2.1	Tomato	plastid	67.09	78.5
GSMUA_Achr2P10990_001	Banana	cytosol	80.77	78.42
GSMUA_Achr1P02060_001	Banana	cytosol	79.06	77.41
GSMUA_Achr7P16440_001	Banana	cytosol	63.68	73.76
KRH20053	Soybean	endoplasmic reticulum	72.22	72.53
GSMUA_Achr9P10010_001	Banana	cytosol	63.25	72.2
GSMUA_Achr6P31600_001	Banana	cytosol	57.27	65.69
GSMUA_Achr6P02970_001	Banana	cytosol	54.7	64.0
VIT_04s0079g00760.t01	Wine grape	cytosol	62.39	63.76
GSMUA_AchrUn_...	Banana	cytosol	23.5	59.14
GSMUA_Achr1P03160_001	Banana	cytosol	43.16	57.39
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	56.41	56.9
GSMUA_Achr5P10670_001	Banana	cytosol	38.89	47.15
GSMUA_Achr4P29310_001	Banana	plastid	41.03	43.84
GSMUA_Achr2P22200_001	Banana	cytosol	36.32	41.06
GSMUA_Achr11P...	Banana	mitochondrion	35.9	40.58
GSMUA_AchrUn_...	Banana	cytosol	35.04	39.42
GSMUA_Achr5P12680_001	Banana	plasma membrane	35.04	39.42
GSMUA_Achr1P00610_001	Banana	cytosol	29.49	38.55
GSMUA_Achr6P10400_001	Banana	cytosol	33.76	38.16
GSMUA_Achr6P32620_001	Banana	mitochondrion	29.49	35.94

Protein Annotations

MapMan:22.8.1.6	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G29680_001	EnsemblPlants:GSMUA_Achr4P29680_001	EnsemblPlants:GSMUA_Achr4T29680_001	UniProt:M0ST80
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296567D	:	:	:

Description

Ras-related protein Rab5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G29680_001]

Coordinates

chr4:-:27553334..27555932

Molecular Weight (calculated)

25953.1 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.104

Length

234 amino acids

Sequence
(BLAST)

001: MATIGNNSMN AKLVLLGDMG TGKSSLVLRF VKGQFLEFQE STIGAAFFSQ TLAVSDATVK LEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DICRMESFER
101: AKKWVQELQK QGNTNMVTAL AGNKCDLADK REVLTEASCV AWTLSSFEYT YNFPVWLPKK MGNMAVDEFI EAQAYAEENG LFFMETSAKA AINVNDIFYE
201: IAKRLPRAQP IQQPAGMVLA DRPAERSQSS ACCS

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.