Factsheet for VIT_04s0079g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00950.t01
VIT_04s0008g00960.t01
VIT_06s0080g00160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	VIT_06s0080g00160.t01	AT2G27600.1	17468262
AT4G19640.1	VIT_04s0008g00950.t01	AT4G33000.1	17825054
AT4G19640.1	VIT_04s0008g00960.t01	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	54.59	86.81
KRG98019	Soybean	cytosol	71.62	82.0
PGSC0003DMT400055259	Potato	cytosol, plastid	67.25	77.0
Solyc02g036450.2.1	Tomato	cytosol, plastid	67.25	77.0
PGSC0003DMT400050774	Potato	cytosol	65.94	75.5
Solyc02g081380.2.1	Tomato	plastid	65.5	75.0
CDX82579	Canola	cytosol	63.32	72.5
Bra027593.1-P	Field mustard	cytosol	62.88	72.36
VIT_11s0016g04020.t01	Wine grape	cytosol	54.59	72.25
Bra025091.1-P	Field mustard	cytosol	62.88	72.0
CDY13065	Canola	cytosol	62.88	72.0
CDY23153	Canola	cytosol	62.88	72.0
CDY39412	Canola	cytosol	62.88	72.0
AT4G19640.1	Thale cress	cytosol	62.01	71.0
Bra013410.1-P	Field mustard	cytosol	62.01	71.0
CDX78949	Canola	cytosol	62.01	70.65
KRH20053	Soybean	endoplasmic reticulum	71.62	70.39
CDX99356	Canola	cytosol	61.57	70.15
Zm00001d013583_P001	Maize	cytosol	60.7	68.47
Zm00001d031179_P001	Maize	extracellular, mitochondrion	60.7	68.14
KXG24102	Sorghum	cytosol	60.7	68.14
EER93694	Sorghum	cytosol	60.26	67.98
Os03t0666500-01	Rice	plasma membrane	59.83	67.49
Os12t0631100-01	Rice	plasma membrane	59.83	67.49
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.26	67.32
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.26	67.32
AT5G45130.2	Thale cress	endoplasmic reticulum	60.26	66.35
HORVU5Hr1G002970.1	Barley	plastid	60.26	66.03
TraesCS5B01G014400.1	Wheat	plastid	59.83	65.55
TraesCS5D01G022200.2	Wheat	golgi	59.83	65.55
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.7	64.65
GSMUA_Achr2P10990_001	Banana	cytosol	65.94	62.66
GSMUA_Achr4P29680_001	Banana	cytosol	63.76	62.39
GSMUA_Achr1P02060_001	Banana	cytosol	64.19	61.51
VIT_09s0002g04600.t01	Wine grape	cytosol	51.97	59.8
HORVU4Hr1G002980.2	Barley	cytosol	60.26	57.74
Zm00001d034949_P001	Maize	extracellular, mitochondrion	59.83	55.24
VIT_13s0019g04680.t01	Wine grape	cytosol	46.29	53.0
Zm00001d036973_P001	Maize	cytosol	12.23	40.58
CDY09323	Canola	extracellular, plastid, vacuole	20.09	40.35
Zm00001d010555_P001	Maize	cytosol	15.72	36.0
VIT_15s0021g00640.t01	Wine grape	cytosol	26.2	33.52
VIT_02s0012g00710.t01	Wine grape	cytosol	26.2	33.52
VIT_00s0665g00040.t01	Wine grape	extracellular	25.33	32.58
CDX78945	Canola	cytosol	6.99	31.37
VIT_02s0012g00790.t01	Wine grape	cytosol	8.3	16.38

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	ProteinID:CCB51128	ProteinID:CCB51128.1	UniProt:F6HFX6	EMBL:FN595753
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787
GO:GO:0030139	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002108A86	ArrayExpress:VIT_04s0079g00760	EnsemblPlantsGene:VIT_04s0079g00760
EnsemblPlants:VIT_04s0079g00760.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:11644303..11658759

Molecular Weight (calculated)

25889.1 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.115

Length

229 amino acids

Sequence
(BLAST)

001: MATIGHNNLN AKLVLLGDMG AGKSSLVLRF VKGQFLEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DITSTESFAR
101: AKKWVQELQK QGNPNMVMAL AGNKADLEDK RKVTAEEARV YAEENGLFFT ETSAKTAVNV NDTFYEIGIT IIPLRDCPEL SLLRIQLGWF WWTDQRKVPK
201: LHHAVPKCQF HNRGDEVLFE NFLFDLLML

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.