Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78949 | Canola | cytosol | 97.0 | 96.52 |
| CDX99356 | Canola | cytosol | 96.5 | 96.02 |
| Bra013410.1-P | Field mustard | cytosol | 95.5 | 95.5 |
| CDX78945 | Canola | cytosol | 24.0 | 94.12 |
| AT5G45130.2 | Thale cress | endoplasmic reticulum | 87.0 | 83.65 |
| Solyc02g069370.2.1 | Tomato | plastid | 83.5 | 83.5 |
| KRG98019 | Soybean | cytosol | 79.5 | 79.5 |
| Os03t0666500-01 | Rice | plasma membrane | 79.5 | 78.33 |
| EER93694 | Sorghum | cytosol | 79.5 | 78.33 |
| GSMUA_Achr7P16440_001 | Banana | cytosol | 78.5 | 77.72 |
| Zm00001d031179_P001 | Maize | extracellular, mitochondrion | 79.0 | 77.45 |
| Zm00001d013583_P001 | Maize | cytosol | 78.5 | 77.34 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 79.0 | 77.07 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 79.0 | 77.07 |
| KXG24102 | Sorghum | cytosol | 78.5 | 76.96 |
| Os12t0631100-01 | Rice | plasma membrane | 77.5 | 76.35 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 75.5 | 75.5 |
| HORVU5Hr1G002970.1 | Barley | plastid | 78.5 | 75.12 |
| TraesCS5B01G014400.1 | Wheat | plastid | 78.0 | 74.64 |
| PGSC0003DMT400050774 | Potato | cytosol | 74.5 | 74.5 |
| TraesCS5D01G022200.2 | Wheat | golgi | 77.5 | 74.16 |
| GSMUA_Achr9P10010_001 | Banana | cytosol | 76.0 | 74.15 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 79.0 | 73.49 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 41.0 | 71.93 |
| KRH20053 | Soybean | endoplasmic reticulum | 79.5 | 68.24 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 79.0 | 66.11 |
| GSMUA_Achr6P31600_001 | Banana | cytosol | 66.0 | 64.71 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 78.5 | 63.31 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 71.0 | 62.01 |
| AT3G54840.1 | Thale cress | cytosol | 50.0 | 49.51 |
| AT2G44610.1 | Thale cress | cytosol | 40.0 | 38.46 |
| AT5G10260.1 | Thale cress | cytosol | 39.0 | 37.68 |
| AT2G22290.1 | Thale cress | cytosol | 38.5 | 37.2 |
| AT5G64990.2 | Thale cress | cytosol | 38.0 | 35.68 |
| AT4G39890.1 | Thale cress | cytosol | 38.0 | 35.51 |
Protein Annotations
| MapMan:22.8.1.6 | PDB:2EFC | PDB:2EFD | PDB:2EFE | PDB:2EFH | Gene3D:3.40.50.300 |
| PDB:4G01 | EntrezGene:827706 | UniProt:A0A178UXV7 | EMBL:AB038491 | ProteinID:AEE84207.1 | EMBL:AF370309 |
| Symbol:ARA7 | ArrayExpress:AT4G19640 | EnsemblPlantsGene:AT4G19640 | RefSeq:AT4G19640 | TAIR:AT4G19640 | RefSeq:AT4G19640-TAIR-G |
| EnsemblPlants:AT4G19640.1 | TAIR:AT4G19640.1 | EMBL:AY052670 | EMBL:AY063095 | ProteinID:CAA16940.1 | ProteinID:CAB78966.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005769 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0007033 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0030139 | GO:GO:0031901 | GO:GO:0031902 | GO:GO:0032585 | GO:GO:0045324 |
| RefSeq:NP_193699.1 | ProteinID:OAO98876.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 | UniProt:Q9SN68 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000009F109 |
Description
RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
Coordinates
chr4:-:10687198..10689748
Molecular Weight (calculated)
21874.0 Da
IEP (calculated)
5.982
GRAVY (calculated)
-0.135
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.