Factsheet for AT4G39890.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

endoplasmic reticulum 2
golgi 2
extracellular 2
mitochondrion 2
cytosol 2
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63926	Canola	cytosol	92.52	92.52
AT2G22290.1	Thale cress	cytosol	84.11	86.96
AT5G10260.1	Thale cress	cytosol	82.24	85.02
AT2G44610.1	Thale cress	cytosol	77.1	79.33
Bra017875.1-P	Field mustard	mitochondrion	92.06	76.36
CDY31610	Canola	mitochondrion	92.06	76.36
AT5G64990.2	Thale cress	cytosol	67.76	68.08
AT4G19640.1	Thale cress	cytosol	35.51	38.0
AT3G54840.1	Thale cress	cytosol	35.51	37.62
AT5G45130.2	Thale cress	endoplasmic reticulum	34.58	35.58

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EntrezGene:830148	UniProt:A0A178V1R4	ProteinID:AEE87134.1	EMBL:AF325109
EMBL:AF386952	ArrayExpress:AT4G39890	EnsemblPlantsGene:AT4G39890	RefSeq:AT4G39890	TAIR:AT4G39890	RefSeq:AT4G39890-TAIR-G
EnsemblPlants:AT4G39890.1	TAIR:AT4G39890.1	Symbol:AtRABH1c	EMBL:BT000043	ProteinID:CAB38902.1	ProteinID:CAB80652.1
GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	GO:GO:0042147	RefSeq:NP_195699.1
ProteinID:OAP00307.1	InterPro:P-loop_NTPase	PFAM:PF00071	PO:PO:0000084	PO:PO:0000293	PO:PO:0001017
PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007616	PO:PO:0009005
PO:PO:0009025	PO:PO:0009046	PO:PO:0009047	PO:PO:0020030	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475	UniProt:Q9SMR4
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000AC2D4	SEG:seg	:	:

Description

RABH1CRABH1c [Source:UniProtKB/TrEMBL;Acc:A0A178V1R4]

Coordinates

chr4:+:18505919..18507703

Molecular Weight (calculated)

23682.1 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.280

Length

214 amino acids

Sequence
(BLAST)

001: MASVSPLAKF KLVFLGDQSV GKTSIITRFM YDKFDTTYQP TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAIVVYD VSNRQTFLNT
101: SKWIEDVHRE RGQSNVIIVL VGNKTDLVEK RQVSISEGED KGKEYGVMFI ETSAKENFNI KALFRKIAAA LPGVDSYSLA TKSDDMVDVN LKTTSNSSQG
201: EQQGGAGGGG GCSC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.