Factsheet for Bra017875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
golgi 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63926	Canola	cytosol	82.56	99.53
CDY31610	Canola	mitochondrion	99.22	99.22
AT4G39890.1	Thale cress	cytosol	76.36	92.06
Bra038535.1-P	Field mustard	cytosol	67.44	84.06
Bra009046.1-P	Field mustard	cytosol	64.34	80.58
Bra037641.1-P	Field mustard	cytosol	64.73	80.29
Bra006054.1-P	Field mustard	cytosol	64.34	80.19
Bra004850.1-P	Field mustard	cytosol	64.34	79.81
Bra000355.1-P	Field mustard	cytosol	63.95	79.33
Bra037802.1-P	Field mustard	cytosol	50.39	65.99
Bra025091.1-P	Field mustard	cytosol	29.84	38.5
Bra014785.1-P	Field mustard	cytosol, plastid	29.46	38.19
Bra013410.1-P	Field mustard	cytosol	29.46	38.0
Bra027593.1-P	Field mustard	cytosol	29.07	37.69
Bra007104.1-P	Field mustard	endoplasmic reticulum	29.07	26.98

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra017875	EnsemblPlants:Bra017875.1	EnsemblPlants:Bra017875.1-P	GO:GO:0000139
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829
GO:GO:0016020	GO:GO:0016787	UniProt:M4DMY8	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	TMHMM:TMhelix
UniParc:UPI0002540DCE	SEG:seg	:	:	:	:

Description

AT4G39890 (E=4e-096) AtRABH1c | AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding

Coordinates

chrA03:-:31178194..31179622

Molecular Weight (calculated)

28481.1 Da

IEP (calculated)

10.185

GRAVY (calculated)

-0.328

Length

258 amino acids

Sequence
(BLAST)

001: MRPSHRRRAR PLSLSSCSRG RKKTSWKKLG SLLSITLLFG SNVNMASVSA LAKFKLVFLG DQSVGKTSII TRFMYDKFDT SYQPTIGIDF LSKTMYLEDR
101: TVRLQLWDTA GQERFRSLIP SYIRDSSVAI VVYDVANRQT FLNIPKWIDD VHRERGGSGD VIIVLVGNKT DLVDKRQVSI SEGEEKGKEH GVMFIETSAK
201: ENFNIKALFR KIAAALPGMD SYSSATKSDN MVDVNLKNTS SSSQGEQQGG GGGGGCSC

Best Arabidopsis Sequence Match ( AT4G39890.1 )
(BLAST)

001: MASVSPLAKF KLVFLGDQSV GKTSIITRFM YDKFDTTYQP TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAIVVYD VSNRQTFLNT
101: SKWIEDVHRE RGQSNVIIVL VGNKTDLVEK RQVSISEGED KGKEYGVMFI ETSAKENFNI KALFRKIAAA LPGVDSYSLA TKSDDMVDVN LKTTSNSSQG
201: EQQGGAGGGG GCSC

Arabidopsis Description

RABH1CRABH1c [Source:UniProtKB/TrEMBL;Acc:A0A178V1R4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.