Factsheet for Bra004850.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 3
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74672	Canola	cytosol	99.52	99.52
AT2G44610.1	Thale cress	cytosol	99.04	99.04
Bra000355.1-P	Field mustard	cytosol	98.08	98.08
Bra037641.1-P	Field mustard	cytosol	98.08	98.08
TraesCS2D01G234600.1	Wheat	plastid	92.31	92.31
TraesCS2B01G261200.1	Wheat	cytosol	92.31	92.31
TraesCS2A01G236600.1	Wheat	cytosol	92.31	92.31
Os07t0496000-01	Rice	plasma membrane	92.31	92.31
HORVU2Hr1G050270.2	Barley	cytosol	92.31	92.31
GSMUA_Achr5P12680_001	Banana	plasma membrane	92.31	92.31
GSMUA_AchrUn_...	Banana	cytosol	91.83	91.83
GSMUA_Achr1P00610_001	Banana	cytosol	78.85	91.62
EER97251	Sorghum	cytosol	91.35	91.35
Zm00001d006433_P001	Maize	plasma membrane	91.35	91.35
Bra009046.1-P	Field mustard	cytosol	84.62	85.44
Bra006054.1-P	Field mustard	cytosol	84.62	85.02
Bra038535.1-P	Field mustard	cytosol	82.69	83.09
Zm00001d021551_P002	Maize	cytosol	91.83	75.2
Bra037802.1-P	Field mustard	cytosol	66.35	70.05
Bra017875.1-P	Field mustard	mitochondrion	79.81	64.34
Bra025091.1-P	Field mustard	cytosol	39.9	41.5
Bra027593.1-P	Field mustard	cytosol	38.46	40.2
Bra014785.1-P	Field mustard	cytosol, plastid	37.98	39.7
Bra013410.1-P	Field mustard	cytosol	37.98	39.5
Zm00001d024612_P011	Maize	mitochondrion	40.38	29.17
Bra007104.1-P	Field mustard	endoplasmic reticulum	37.98	28.42

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra004850	EnsemblPlants:Bra004850.1	EnsemblPlants:Bra004850.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CKW4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002547E1F	:	:

Description

AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding

Coordinates

chrA05:-:2133155..2135330

Molecular Weight (calculated)

23118.7 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.127

Length

208 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLLFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELSVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.