Factsheet for Bra006054.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81166	Canola	cytosol	100.0	100.0
CDX78373	Canola	cytosol	100.0	100.0
Bra009046.1-P	Field mustard	cytosol	93.72	94.17
AT5G10260.1	Thale cress	cytosol	91.3	91.3
Bra038535.1-P	Field mustard	cytosol	85.99	85.99
GSMUA_Achr6P10400_001	Banana	cytosol	85.51	85.51
GSMUA_Achr2P22200_001	Banana	cytosol	85.51	85.51
Bra037641.1-P	Field mustard	cytosol	85.51	85.1
Bra004850.1-P	Field mustard	cytosol	85.02	84.62
Bra000355.1-P	Field mustard	cytosol	84.54	84.13
Zm00001d006905_P001	Maize	mitochondrion	84.54	83.73
EER97564	Sorghum	cytosol	83.57	82.78
Os03t0191400-01	Rice	plasma membrane	78.26	75.35
KXG39985	Sorghum	cytosol	77.29	75.12
TraesCS4D01G305100.1	Wheat	cytosol	76.81	74.3
TraesCS4A01G407500.1	Wheat	cytosol	76.33	73.83
TraesCS4B01G306900.1	Wheat	cytosol	75.85	73.36
Bra037802.1-P	Field mustard	cytosol	67.63	71.07
Bra017875.1-P	Field mustard	mitochondrion	80.19	64.34
Zm00001d028012_P001	Maize	cytosol, extracellular	64.73	60.36
HORVU4Hr1G078690.2	Barley	plastid	75.85	51.14
Bra014785.1-P	Field mustard	cytosol, plastid	38.16	39.7
Bra025091.1-P	Field mustard	cytosol	38.16	39.5
Bra027593.1-P	Field mustard	cytosol	37.68	39.2
Bra013410.1-P	Field mustard	cytosol	37.68	39.0
Bra007104.1-P	Field mustard	endoplasmic reticulum	37.68	28.06

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra006054	EnsemblPlants:Bra006054.1	EnsemblPlants:Bra006054.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CPB6	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF630	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253F83C	:	:

Description

AT5G10260 (E=7e-106) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding

Coordinates

chrA03:+:1776011..1777597

Molecular Weight (calculated)

23040.5 Da

IEP (calculated)

8.183

GRAVY (calculated)

-0.204

Length

207 amino acids

Sequence
(BLAST)

001: MAAVTPLAKF KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTLRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWVEDVRTE RGNDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDFGVIFIE TSAKAGFNIK PLFRKISAAL PGMDTLSSAK QGDMVDVNLK SSNHSSQAEQ
201: QSGGCSC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.