Factsheet for Bra027593.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23153	Canola	cytosol	99.5	99.0
CDY13065	Canola	cytosol	99.0	98.5
Bra025091.1-P	Field mustard	cytosol	94.97	94.5
AT5G45130.2	Thale cress	endoplasmic reticulum	92.46	88.46
Bra013410.1-P	Field mustard	cytosol	87.94	87.5
Solyc02g069370.2.1	Tomato	plastid	85.93	85.5
KRG98019	Soybean	cytosol	81.41	81.0
Os03t0666500-01	Rice	plasma membrane	80.9	79.31
Zm00001d013583_P001	Maize	cytosol	80.4	78.82
KXG24102	Sorghum	cytosol	80.4	78.43
Zm00001d031179_P001	Maize	extracellular, mitochondrion	80.4	78.43
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.4	78.05
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.4	78.05
EER93694	Sorghum	cytosol	79.4	77.83
GSMUA_Achr7P16440_001	Banana	cytosol	77.39	76.24
PGSC0003DMT400050774	Potato	cytosol	76.38	76.0
Os12t0631100-01	Rice	plasma membrane	77.39	75.86
HORVU5Hr1G002970.1	Barley	plastid	79.4	75.6
PGSC0003DMT400055259	Potato	cytosol, plastid	75.88	75.5
TraesCS5D01G022200.2	Wheat	golgi	78.39	74.64
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.4	74.42
TraesCS5B01G014400.1	Wheat	plastid	77.89	74.16
GSMUA_Achr9P10010_001	Banana	cytosol	76.38	74.15
KRH20053	Soybean	endoplasmic reticulum	81.41	69.53
HORVU4Hr1G002980.2	Barley	cytosol	80.4	66.95
GSMUA_Achr6P31600_001	Banana	cytosol	65.83	64.22
Zm00001d034949_P001	Maize	extracellular, mitochondrion	78.39	62.9
VIT_04s0079g00760.t01	Wine grape	cytosol	72.36	62.88
Bra014785.1-P	Field mustard	cytosol, plastid	50.75	50.75
Bra037641.1-P	Field mustard	cytosol	40.2	38.46
Bra004850.1-P	Field mustard	cytosol	40.2	38.46
Bra000355.1-P	Field mustard	cytosol	40.2	38.46
Bra006054.1-P	Field mustard	cytosol	39.2	37.68
Bra009046.1-P	Field mustard	cytosol	37.69	36.41
Bra038535.1-P	Field mustard	cytosol	37.69	36.23
Bra007104.1-P	Field mustard	endoplasmic reticulum	49.75	35.61
Bra037802.1-P	Field mustard	cytosol	34.17	34.52
Bra017875.1-P	Field mustard	mitochondrion	37.69	29.07

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra027593	EnsemblPlants:Bra027593.1	EnsemblPlants:Bra027593.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4EFN1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000254267E	:	:

Description

AT5G45130 (E=7e-105) ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RHA1 (RAB HOMOLOG 1); GTP binding

Coordinates

chrA09:-:13045337..13046946

Molecular Weight (calculated)

21422.5 Da

IEP (calculated)

5.011

GRAVY (calculated)

-0.088

Length

199 amino acids

Sequence
(BLAST)

001: MATAGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSPEEAEA YAQENSLFFM ETSAKTATNV KDIFYEIGKL PRVQPAENPT GMVLPNGPGA TAASASCCA

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.