Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 99.51 | 99.51 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 100.0 | 95.35 |
| Os03t0666500-01 | Rice | plasma membrane | 93.66 | 94.58 |
| EER93694 | Sorghum | cytosol | 89.27 | 90.15 |
| Zm00001d013583_P001 | Maize | cytosol | 89.27 | 90.15 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 99.51 | 85.36 |
| Solyc02g069370.2.1 | Tomato | plastid | 80.49 | 82.5 |
| CDY13065 | Canola | cytosol | 79.51 | 81.5 |
| GSMUA_Achr7P16440_001 | Banana | cytosol | 80.0 | 81.19 |
| CDY23153 | Canola | cytosol | 79.02 | 81.0 |
| Bra027593.1-P | Field mustard | cytosol | 78.05 | 80.4 |
| KRG98019 | Soybean | cytosol | 78.05 | 80.0 |
| GSMUA_Achr9P10010_001 | Banana | cytosol | 80.0 | 80.0 |
| CDX82579 | Canola | cytosol | 77.56 | 79.5 |
| CDY39412 | Canola | cytosol | 77.56 | 79.5 |
| Bra025091.1-P | Field mustard | cytosol | 77.56 | 79.5 |
| AT4G19640.1 | Thale cress | cytosol | 77.07 | 79.0 |
| Bra013410.1-P | Field mustard | cytosol | 76.59 | 78.5 |
| CDX99356 | Canola | cytosol | 76.1 | 77.61 |
| CDX78949 | Canola | cytosol | 76.1 | 77.61 |
| PGSC0003DMT400050774 | Potato | cytosol | 73.17 | 75.0 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 73.17 | 75.0 |
| AT5G45130.2 | Thale cress | endoplasmic reticulum | 75.61 | 74.52 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 87.8 | 72.58 |
| GSMUA_Achr6P31600_001 | Banana | cytosol | 71.22 | 71.57 |
| KRH20053 | Soybean | endoplasmic reticulum | 78.05 | 68.67 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 67.32 | 60.26 |
| TraesCS1A01G140700.1 | Wheat | cytosol | 44.88 | 60.13 |
| CDX78945 | Canola | cytosol | 14.15 | 56.86 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 29.76 | 53.51 |
| TraesCS4A01G035800.1 | Wheat | plastid | 50.73 | 52.26 |
| TraesCS2A01G236600.1 | Wheat | cytosol | 36.59 | 36.06 |
| TraesCS4A01G407500.1 | Wheat | cytosol | 36.59 | 35.05 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| EnsemblPlantsGene:TraesCS4A01G294600 | EnsemblPlants:TraesCS4A01G294600.1 | TIGR:cd01860 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:595847372..595852760
Molecular Weight (calculated)
22242.3 Da
IEP (calculated)
7.254
GRAVY (calculated)
-0.132
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASAGSKIR NAKLVLLGDV GAGKSSLVLR FVKGQFVEFQ ESTIGAAFFS QTLAVNDETV KFEIWDTAGQ ERYHSLAPMY YRGAAAAIVV YDISNQASFT
101: RAKKWVQELQ AQGNQNTVVA LAGNKADLLE AREVQIEEAK TYAQENGLFF METSAKTATN VNDIFYEIAK RLLQGQAAQN PQAAGMVLSQ RPNERVVSAA
201: SCCSS
101: RAKKWVQELQ AQGNQNTVVA LAGNKADLLE AREVQIEEAK TYAQENGLFF METSAKTATN VNDIFYEIAK RLLQGQAAQN PQAAGMVLSQ RPNERVVSAA
201: SCCSS
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
Arabidopsis Description
RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.