CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68929
CDX71438
CDX72384
CDX75314
CDX83275
CDY04300
CDY04504
CDY13513
CDY28278
CDY31186
CDY45024

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	CDX71438	AT2G27600.1	17468262
AT4G19640.1	CDX83275	AT2G27600.1	17468262
AT4G19640.1	CDY04504	AT2G27600.1	17468262
AT4G19640.1	CDY31186	AT2G27600.1	17468262
AT4G19640.1	CDX68929	AT4G33000.1	17825054
AT4G19640.1	CDX72384	AT4G33000.1	17825054
AT4G19640.1	CDX75314	AT4G33000.1	17825054
AT4G19640.1	CDY04300	AT4G33000.1	17825054
AT4G19640.1	CDY13513	AT4G33000.1	17825054
AT4G19640.1	CDY28278	AT4G33000.1	17825054
AT4G19640.1	CDY45024	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09323	Canola	extracellular, plastid, vacuole	82.35	36.84
CDX78949	Canola	cytosol	96.08	24.38
CDX99356	Canola	cytosol	96.08	24.38
AT4G19640.1	Thale cress	cytosol	94.12	24.0
CDY39412	Canola	cytosol	76.47	19.5
CDY23153	Canola	cytosol	76.47	19.5
CDY13065	Canola	cytosol	76.47	19.5
CDX82579	Canola	cytosol	76.47	19.5
KRG98019	Soybean	cytosol	64.71	16.5
Solyc02g069370.2.1	Tomato	plastid	64.71	16.5
PGSC0003DMT400055259	Potato	cytosol, plastid	64.71	16.5
PGSC0003DMT400050774	Potato	cytosol	62.75	16.0
GSMUA_Achr7P16440_001	Banana	cytosol	62.75	15.84
Os03t0666500-01	Rice	plasma membrane	60.78	15.27
Zm00001d031179_P001	Maize	extracellular, mitochondrion	58.82	14.71
KXG24102	Sorghum	cytosol	58.82	14.71
EER93694	Sorghum	cytosol	56.86	14.29
Zm00001d013583_P001	Maize	cytosol	56.86	14.29
KRH20053	Soybean	endoplasmic reticulum	64.71	14.16
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.86	14.15
GSMUA_Achr9P10010_001	Banana	cytosol	56.86	14.15
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.86	14.15
HORVU5Hr1G002970.1	Barley	plastid	56.86	13.88
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.86	13.49
TraesCS5B01G014400.1	Wheat	plastid	54.9	13.4
Os12t0631100-01	Rice	plasma membrane	52.94	13.3
TraesCS5D01G022200.2	Wheat	golgi	52.94	12.92
GSMUA_Achr6P31600_001	Banana	cytosol	50.98	12.75
HORVU4Hr1G002980.2	Barley	cytosol	56.86	12.13
Zm00001d034949_P001	Maize	extracellular, mitochondrion	54.9	11.29
CDY55834	Canola	cytosol, plastid	33.33	8.37
CDX78272	Canola	cytosol	33.33	8.37
CDX74672	Canola	cytosol	33.33	8.17
CDY48241	Canola	cytosol	33.33	8.17
CDY30479	Canola	cytosol	33.33	8.17
CDX83425	Canola	cytosol	33.33	8.17
CDX95606	Canola	cytosol	33.33	8.17
CDY61658	Canola	cytosol	31.37	7.92
CDY63926	Canola	cytosol	31.37	7.48
CDX81264	Canola	cytosol	29.41	7.35
CDX96987	Canola	cytosol	29.41	7.28
CDX69850	Canola	cytosol	29.41	7.28
CDY13772	Canola	cytosol	29.41	7.25
CDX81166	Canola	cytosol	29.41	7.25
CDX78373	Canola	cytosol	29.41	7.25
VIT_04s0079g00760.t01	Wine grape	cytosol	31.37	6.99
CDY18689	Canola	cytosol	29.41	6.91
CDY31610	Canola	mitochondrion	31.37	6.2
CDY02896	Canola	endoplasmic reticulum, golgi	29.41	5.58
CDX76936	Canola	cytosol	29.41	5.45
CDY23446	Canola	cytosol	33.33	2.83

Protein Annotations

EnsemblPlants:CDX78945

EnsemblPlantsGene:GSBRNA2T00131443001

ProteinID:CDX78945

ProteinID:CDX78945.1

UniParc:UPI0004EE7C42

MapMan:35.1

Description

BnaA01g10120D

Coordinates

chrLK031816:+:996131..996414

Molecular Weight (calculated)

5571.7 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.412

Length

51 amino acids

Sequence
(BLAST)

1: METSAKTAAN VKEIFYEIAR RLPRVQPTEN PTGMVLPDRA MDRGASSSCC A

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.