Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012009.1-P | Field mustard | cytosol | 99.54 | 99.31 |
| CDX71438 | Canola | cytosol | 97.92 | 98.6 |
| CDX83275 | Canola | cytosol | 97.69 | 97.46 |
| CDY31186 | Canola | cytosol | 96.76 | 96.31 |
| AT2G27600.1 | Thale cress | cytosol | 96.3 | 95.63 |
| CDX93578 | Canola | cytosol | 93.52 | 93.95 |
| CDX95077 | Canola | cytosol | 93.06 | 93.27 |
| KRH26619 | Soybean | nucleus | 90.51 | 89.68 |
| KRH22691 | Soybean | cytosol | 84.72 | 89.49 |
| KRH30451 | Soybean | cytosol | 89.35 | 88.94 |
| KRH25197 | Soybean | cytosol | 89.35 | 88.94 |
| VIT_06s0080g00160.t01 | Wine grape | extracellular | 89.12 | 88.91 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 62.27 | 88.78 |
| GSMUA_Achr4P24320_001 | Banana | cytosol | 83.1 | 87.99 |
| Zm00001d039904_P006 | Maize | cytosol | 88.19 | 87.59 |
| EES00346 | Sorghum | cytosol | 88.19 | 87.39 |
| GSMUA_Achr2P22550_001 | Banana | cytosol | 82.87 | 86.89 |
| TraesCS3A01G054100.1 | Wheat | cytosol | 87.73 | 86.53 |
| TraesCS3B01G065200.1 | Wheat | cytosol | 87.5 | 86.3 |
| GSMUA_Achr3P01430_001 | Banana | cytosol | 81.94 | 86.13 |
| TraesCS3D01G053600.1 | Wheat | cytosol | 87.27 | 86.07 |
| PGSC0003DMT400050194 | Potato | cytosol | 86.57 | 85.98 |
| Solyc11g007170.1.1 | Tomato | cytosol | 80.09 | 85.64 |
| Zm00001d008596_P005 | Maize | cytosol | 87.96 | 83.52 |
| TraesCS6A01G133300.1 | Wheat | cytosol | 73.84 | 72.83 |
| TraesCS6D01G122900.1 | Wheat | cytosol | 73.61 | 72.77 |
| TraesCS6B01G161700.1 | Wheat | cytosol | 73.38 | 72.54 |
| Os02t0159900-01 | Rice | plasma membrane | 72.22 | 72.06 |
| Os01t0141300-00 | Rice | cytosol | 72.92 | 65.9 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 74.54 | 61.45 |
| CDY18925 | Canola | plastid | 32.64 | 38.95 |
| CDX84641 | Canola | cytosol | 31.94 | 36.8 |
| CDX79566 | Canola | cytosol | 31.94 | 36.7 |
| CDY17260 | Canola | cytosol | 32.41 | 36.55 |
| CDX84306 | Canola | cytosol | 32.18 | 36.01 |
| CDX74745 | Canola | cytosol | 35.65 | 32.42 |
| CDY37590 | Canola | cytosol | 35.19 | 29.75 |
| CDY38662 | Canola | cytosol | 35.19 | 29.46 |
| CDY37046 | Canola | cytosol | 34.72 | 29.35 |
| CDX79393 | Canola | cytosol | 35.65 | 29.11 |
| CDY57698 | Canola | cytosol | 35.65 | 29.0 |
| CDY38752 | Canola | endoplasmic reticulum | 25.69 | 28.76 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 25.0 | 27.76 |
| CDY19035 | Canola | endoplasmic reticulum | 25.0 | 27.55 |
| CDY14372 | Canola | endoplasmic reticulum | 25.23 | 27.46 |
| CDY20251 | Canola | endoplasmic reticulum | 25.23 | 27.11 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 24.54 | 27.11 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 24.54 | 27.11 |
| CDY55344 | Canola | endoplasmic reticulum | 24.54 | 27.04 |
| CDY30236 | Canola | endoplasmic reticulum | 24.54 | 27.04 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 24.54 | 27.04 |
| CDY24618 | Canola | endoplasmic reticulum | 16.67 | 25.62 |
| CDY28494 | Canola | plastid | 32.18 | 21.45 |
| CDY34176 | Canola | plastid | 32.18 | 21.45 |
| CDX92656 | Canola | cytosol | 21.06 | 21.11 |
| CDY27380 | Canola | nucleus | 35.19 | 20.49 |
| CDX96166 | Canola | cytosol | 26.85 | 17.08 |
| CDY19639 | Canola | extracellular, vacuole | 29.4 | 15.82 |
| CDY49165 | Canola | extracellular, plasma membrane | 28.47 | 15.75 |
| CDY56163 | Canola | extracellular, vacuole | 28.94 | 15.53 |
| CDY51824 | Canola | extracellular, plasma membrane | 28.94 | 15.51 |
| CDY08360 | Canola | endoplasmic reticulum | 29.4 | 15.28 |
| CDY38192 | Canola | plasma membrane | 29.17 | 15.16 |
| CDY33415 | Canola | cytosol, mitochondrion | 30.56 | 12.99 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 29.86 | 12.91 |
| CDY45052 | Canola | mitochondrion | 29.63 | 12.81 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 30.09 | 12.49 |
| CDX91317 | Canola | plastid | 28.01 | 11.44 |
| CDX89214 | Canola | extracellular, plasma membrane | 19.91 | 11.35 |
| CDY32485 | Canola | plastid | 28.01 | 10.98 |
| CDX90936 | Canola | plastid | 27.78 | 10.97 |
| CDX97266 | Canola | plastid | 27.78 | 10.61 |
| CDX89933 | Canola | plastid | 27.78 | 10.38 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.9 | 10.17 |
| CDY18018 | Canola | plastid | 28.47 | 10.08 |
| CDY18129 | Canola | cytosol, plastid | 28.24 | 10.05 |
| CDY50381 | Canola | plastid | 27.55 | 9.91 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.74 | 9.7 |
| CDY22053 | Canola | plastid | 27.55 | 9.68 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.74 | 9.66 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:22.5.4.4.1 | Gene3D:3.40.50.300 | GO:A0A078EV85 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDY04504 | ProteinID:CDY04504 | ProteinID:CDY04504.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00118671001 | InterPro:MIT | InterPro:MIT_dom_sf |
| InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF04212 | PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 |
| PANTHER:PTHR23074:SF137 | SMART:SM00382 | SMART:SM00745 | SUPFAM:SSF116846 | SUPFAM:SSF52540 | UniParc:UPI0004EE32C0 |
| InterPro:Vps4_C | SEG:seg | : | : | : | : |
Description
BnaA07g13300D
Coordinates
chrLK031955:+:329744..332344
Molecular Weight (calculated)
48206.1 Da
IEP (calculated)
6.429
GRAVY (calculated)
-0.550
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNFKEQAI EYVKQAVEED NAGNYSKAFP LYMNALEYFK THLKYEKNPK IREAITHKFT EYLRRAEEIR AVLDEGGPGP GSNGDAAVAT KPKSKPKDGG
101: GDGEDPEQSK LRAGLDSAIV REKPNIKWTD VAGLESAKQA LQEAVILPVK FPQFFTGKRR PWRAFLLYGP PGTGKSYLAK AVATEADSTF FSVSSSDLVS
201: KWMGESEKLV SNLFEMARES SPSIIFVDEI DSLCGQRGEG NESEASRRIK TELLVQMQGV GHSDDKVLVL AATNTPYALD QAIRRRFDKR IYIPLPEAKA
301: RQHMFKVHLG DTPHNLTESD FEYLGLKTEG FSGSDVSVCV KDVLFEPVRK TQDAMFFFKS PDGTWMPCGP RQPGAIQTTM QDLATKGLAE KIIPPPITRT
401: DFEKVLARQR PTVSKSDLDV HERFTQEFGE EG
101: GDGEDPEQSK LRAGLDSAIV REKPNIKWTD VAGLESAKQA LQEAVILPVK FPQFFTGKRR PWRAFLLYGP PGTGKSYLAK AVATEADSTF FSVSSSDLVS
201: KWMGESEKLV SNLFEMARES SPSIIFVDEI DSLCGQRGEG NESEASRRIK TELLVQMQGV GHSDDKVLVL AATNTPYALD QAIRRRFDKR IYIPLPEAKA
301: RQHMFKVHLG DTPHNLTESD FEYLGLKTEG FSGSDVSVCV KDVLFEPVRK TQDAMFFFKS PDGTWMPCGP RQPGAIQTTM QDLATKGLAE KIIPPPITRT
401: DFEKVLARQR PTVSKSDLDV HERFTQEFGE EG
001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
Arabidopsis Description
SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.