Factsheet for Zm00001d008596_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013583_P001
Zm00001d031179_P001
Zm00001d034949_P001
Zm00001d037415_P002
Zm00001d037417_P002
Zm00001d045870_P001
Zm00001d048410_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Zm00001d048410_P004	AT3G54840.1	17468262
AT2G27600.1	Zm00001d013583_P001	AT4G19640.1	17468262
AT2G27600.1	Zm00001d031179_P001	AT4G19640.1	17468262
AT2G27600.1	Zm00001d034949_P001	AT4G19640.1	17468262
AT2G27600.1	Zm00001d037415_P002	AT4G26750.1	17468262
AT2G27600.1	Zm00001d037417_P002	AT4G26750.1	17468262
AT2G27600.1	Zm00001d045870_P001	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039904_P006	Maize	cytosol	94.73	99.08
EES00346	Sorghum	cytosol	94.73	98.85
Os01t0141100-02	Rice	cytosol, plasma membrane	64.84	97.36
TraesCS3A01G054100.1	Wheat	cytosol	90.77	94.29
TraesCS3D01G053600.1	Wheat	cytosol	90.77	94.29
TraesCS3B01G065200.1	Wheat	cytosol	90.55	94.06
GSMUA_Achr4P24320_001	Banana	cytosol	81.76	91.18
GSMUA_Achr2P22550_001	Banana	cytosol	81.98	90.53
Bra018640.1-P	Field mustard	cytosol	85.05	90.0
CDX93578	Canola	cytosol	85.05	90.0
GSMUA_Achr3P01430_001	Banana	cytosol	80.88	89.54
CDX95077	Canola	cytosol	84.62	89.33
KRH22691	Soybean	cytosol	80.22	89.24
KRH26619	Soybean	nucleus	85.49	89.22
CDX83275	Canola	cytosol	84.4	88.68
KRH30451	Soybean	cytosol	84.4	88.48
KRH25197	Soybean	cytosol	84.4	88.48
Bra000503.1-P	Field mustard	cytosol	84.18	88.45
CDY31186	Canola	cytosol	84.18	88.25
Bra012009.1-P	Field mustard	cytosol	83.74	87.99
CDY04504	Canola	cytosol	83.52	87.96
CDX71438	Canola	cytosol	82.64	87.65
AT2G27600.1	Thale cress	cytosol	83.74	87.59
VIT_13s0106g00490.t01	Wine grape	cytosol	83.3	87.33
PGSC0003DMT400050194	Potato	cytosol	81.32	85.06
Solyc11g007170.1.1	Tomato	cytosol	75.38	84.9
Os01t0141300-00	Rice	cytosol	73.41	69.87
HORVU3Hr1G010300.1	Barley	cytosol, plastid	76.92	66.79
Zm00001d029385_P001	Maize	cytosol	17.58	41.88
Zm00001d049686_P001	Maize	plastid	18.68	35.56
Zm00001d043410_P002	Maize	cytosol	30.99	33.98
Zm00001d045483_P002	Maize	cytosol	33.63	30.72
Zm00001d011611_P005	Maize	cytosol	33.63	29.65
Zm00001d011563_P019	Maize	mitochondrion	32.09	27.81
Zm00001d014775_P002	Maize	plastid	23.08	26.85
Zm00001d036410_P002	Maize	plastid	23.08	22.06
Zm00001d041083_P005	Maize	nucleus	30.99	20.8
Zm00001d043841_P003	Maize	cytosol	33.41	16.81
Zm00001d039315_P003	Maize	vacuole	28.35	15.34
Zm00001d008983_P001	Maize	vacuole	28.35	15.25
Zm00001d009702_P001	Maize	endoplasmic reticulum	27.03	14.59
Zm00001d052248_P009	Maize	mitochondrion	26.15	12.06
Zm00001d007139_P007	Maize	cytosol, plastid	25.71	11.07
Zm00001d047494_P007	Maize	cytosol	25.71	10.58
Zm00001d029120_P004	Maize	cytosol	25.93	10.48
Zm00001d048689_P004	Maize	plastid	28.57	10.37
Zm00001d007698_P002	Maize	plastid	28.35	10.19

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	UniProt:A0A1D6FE31	InterPro:AAA+_ATPase
ProteinID:AQK90226.1	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336
PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540
UniParc:UPI0008445157	InterPro:Vps4_C	EnsemblPlantsGene:Zm00001d008596	EnsemblPlants:Zm00001d008596_P005	EnsemblPlants:Zm00001d008596_T005	SEG:seg

Description

Vacuolar sorting protein 4b

Coordinates

chr8:-:13967642..13972786

Molecular Weight (calculated)

50670.4 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.517

Length

455 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYVKAFP LYMNALEYFK THLKYEKNPK IKEAITAKFT EYLRRAEEIR AVLDEGGAGP GANGGDAAVA TRPKTKGKDG
101: DGGNGGDDSE QSKLRAGLNS AIITEKPNVK WNDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSISSSD
201: LVSKWMGESE KLVANLFQMA RENAPSIIFI DEIDSLCGQR GEGNESEASR RIKTELLVQM QGVGHNDDKV LVLAATNTPY ALDQVTKKNH VPFCIVYRFA
301: KTKRAVRRRF DKRIYIPLPD TKARQHMFKV HLGDTPHSLT ESDFESLARR TDGFSGSDVA VCVKDVLFEP VRKTQDAMFF FKADGDMWMP CGPKQPGSVQ
401: TTMQELASKG LAAKILPPPI SRTDFEKVLS RQRPTVSKKD LEVHERFTKE FGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.