Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012009.1-P | Field mustard | cytosol | 98.83 | 97.92 |
| CDY04504 | Canola | cytosol | 98.6 | 97.92 |
| CDX83275 | Canola | cytosol | 97.44 | 96.54 |
| CDY31186 | Canola | cytosol | 96.97 | 95.85 |
| AT2G27600.1 | Thale cress | cytosol | 95.8 | 94.48 |
| CDX93578 | Canola | cytosol | 93.24 | 93.02 |
| CDX95077 | Canola | cytosol | 92.77 | 92.34 |
| KRH26619 | Soybean | nucleus | 90.44 | 88.99 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 62.7 | 88.78 |
| KRH22691 | Soybean | cytosol | 84.62 | 88.75 |
| KRH30451 | Soybean | cytosol | 89.04 | 88.02 |
| KRH25197 | Soybean | cytosol | 89.04 | 88.02 |
| VIT_06s0080g00160.t01 | Wine grape | extracellular | 88.81 | 87.99 |
| GSMUA_Achr4P24320_001 | Banana | cytosol | 83.68 | 87.99 |
| GSMUA_Achr2P22550_001 | Banana | cytosol | 83.68 | 87.14 |
| Zm00001d039904_P006 | Maize | cytosol | 87.88 | 86.67 |
| EES00346 | Sorghum | cytosol | 87.88 | 86.47 |
| GSMUA_Achr3P01430_001 | Banana | cytosol | 82.52 | 86.13 |
| Solyc11g007170.1.1 | Tomato | cytosol | 80.65 | 85.64 |
| TraesCS3A01G054100.1 | Wheat | cytosol | 87.41 | 85.62 |
| TraesCS3B01G065200.1 | Wheat | cytosol | 87.18 | 85.39 |
| PGSC0003DMT400050194 | Potato | cytosol | 86.48 | 85.29 |
| TraesCS3D01G053600.1 | Wheat | cytosol | 86.95 | 85.16 |
| Zm00001d008596_P005 | Maize | cytosol | 87.65 | 82.64 |
| TraesCS6A01G133300.1 | Wheat | cytosol | 73.89 | 72.37 |
| TraesCS6D01G122900.1 | Wheat | cytosol | 73.66 | 72.31 |
| TraesCS6B01G161700.1 | Wheat | cytosol | 73.43 | 72.08 |
| Os02t0159900-01 | Rice | plasma membrane | 72.03 | 71.36 |
| Os01t0141300-00 | Rice | cytosol | 73.66 | 66.11 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 74.13 | 60.69 |
| CDY18925 | Canola | plastid | 32.4 | 38.4 |
| CDX84641 | Canola | cytosol | 32.17 | 36.8 |
| CDX79566 | Canola | cytosol | 32.17 | 36.7 |
| CDY17260 | Canola | cytosol | 32.63 | 36.55 |
| CDX84306 | Canola | cytosol | 32.4 | 36.01 |
| CDX74745 | Canola | cytosol | 35.2 | 31.79 |
| CDY37590 | Canola | cytosol | 35.2 | 29.55 |
| CDX79393 | Canola | cytosol | 36.13 | 29.3 |
| CDY38662 | Canola | cytosol | 35.2 | 29.26 |
| CDY57698 | Canola | cytosol | 36.13 | 29.19 |
| CDY37046 | Canola | cytosol | 34.73 | 29.16 |
| CDY38752 | Canola | endoplasmic reticulum | 25.87 | 28.76 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 25.17 | 27.76 |
| CDY19035 | Canola | endoplasmic reticulum | 25.17 | 27.55 |
| CDY14372 | Canola | endoplasmic reticulum | 25.41 | 27.46 |
| CDY20251 | Canola | endoplasmic reticulum | 25.41 | 27.11 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 24.71 | 27.11 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 24.71 | 27.11 |
| CDY55344 | Canola | endoplasmic reticulum | 24.71 | 27.04 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 24.71 | 27.04 |
| CDY30236 | Canola | endoplasmic reticulum | 24.71 | 27.04 |
| CDY24618 | Canola | endoplasmic reticulum | 16.78 | 25.62 |
| CDY28494 | Canola | plastid | 32.4 | 21.45 |
| CDY34176 | Canola | plastid | 32.4 | 21.45 |
| CDX92656 | Canola | cytosol | 21.21 | 21.11 |
| CDY27380 | Canola | nucleus | 35.2 | 20.35 |
| CDX96166 | Canola | cytosol | 26.57 | 16.79 |
| CDY49165 | Canola | extracellular, plasma membrane | 28.67 | 15.75 |
| CDY19639 | Canola | extracellular, vacuole | 29.37 | 15.69 |
| CDY56163 | Canola | extracellular, vacuole | 29.14 | 15.53 |
| CDY08360 | Canola | endoplasmic reticulum | 30.07 | 15.52 |
| CDY51824 | Canola | extracellular, plasma membrane | 29.14 | 15.51 |
| CDY38192 | Canola | plasma membrane | 29.84 | 15.4 |
| CDY33415 | Canola | cytosol, mitochondrion | 30.77 | 12.99 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 29.84 | 12.81 |
| CDY45052 | Canola | mitochondrion | 29.6 | 12.71 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 30.3 | 12.49 |
| CDX91317 | Canola | plastid | 28.21 | 11.44 |
| CDX89214 | Canola | extracellular, plasma membrane | 19.81 | 11.21 |
| CDY32485 | Canola | plastid | 28.21 | 10.98 |
| CDX90936 | Canola | plastid | 27.97 | 10.97 |
| CDX97266 | Canola | plastid | 27.97 | 10.61 |
| CDX89933 | Canola | plastid | 27.97 | 10.38 |
| CDY18018 | Canola | plastid | 28.67 | 10.08 |
| CDY18129 | Canola | cytosol, plastid | 28.44 | 10.05 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.78 | 10.03 |
| CDY50381 | Canola | plastid | 27.74 | 9.91 |
| CDY22053 | Canola | plastid | 27.74 | 9.68 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.62 | 9.56 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.62 | 9.52 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:22.5.4.4.1 | Gene3D:3.40.50.300 | GO:A0A078C8T3 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDX71438 | ProteinID:CDX71438 | ProteinID:CDX71438.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00148287001 | InterPro:MIT | InterPro:MIT_dom_sf |
| InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF04212 | PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 |
| PANTHER:PTHR23074:SF137 | SMART:SM00382 | SMART:SM00745 | SUPFAM:SSF116846 | SUPFAM:SSF52540 | UniParc:UPI0004EDF992 |
| InterPro:Vps4_C | SEG:seg | : | : | : | : |
Description
BnaC04g16730D
Coordinates
chrLK031793:-:879358..881763
Molecular Weight (calculated)
47821.7 Da
IEP (calculated)
6.296
GRAVY (calculated)
-0.548
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNLKEQAI EYVKQAVQED NGGNYSKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGPGP GSNGGDAAVK SKPKEGGGDG
101: EDPEQSKLRA GLDSAIVREK PNIKWTDVAG LESAKQALQE AVILPVKFPQ FFTGKRRPWR AFLLYGPPGT GKSYLAKAVA TEADSTFFSV SSSDLVSKWM
201: GESEKLVSNL FEMARESSPS IIFVDEIDSL CGQRGEGNES EASRRIKTEL LVQMQGVGHS DDKVLVLAAT NTPYALDQAI RRRFDKRIYI PLPEAKARQH
301: MFKVHLGDTP HNLTESDFEY LGLKTEGFSG SDVSVCVKDV LFEPVRKTQD AMFFFKSPDG TWMPCGPRQP GAIQTTMQDL ATKGLAEKII PPPITRTDFE
401: KVLARQRPTV SKSDLDVHER FTQEFGEEG
101: EDPEQSKLRA GLDSAIVREK PNIKWTDVAG LESAKQALQE AVILPVKFPQ FFTGKRRPWR AFLLYGPPGT GKSYLAKAVA TEADSTFFSV SSSDLVSKWM
201: GESEKLVSNL FEMARESSPS IIFVDEIDSL CGQRGEGNES EASRRIKTEL LVQMQGVGHS DDKVLVLAAT NTPYALDQAI RRRFDKRIYI PLPEAKARQH
301: MFKVHLGDTP HNLTESDFEY LGLKTEGFSG SDVSVCVKDV LFEPVRKTQD AMFFFKSPDG TWMPCGPRQP GAIQTTMQDL ATKGLAEKII PPPITRTDFE
401: KVLARQRPTV SKSDLDVHER FTQEFGEEG
001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
Arabidopsis Description
SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.