Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003561.1-P | Field mustard | cytosol | 98.11 | 97.74 |
| CDY57698 | Canola | cytosol | 97.92 | 97.55 |
| CDY37590 | Canola | cytosol | 91.12 | 94.32 |
| CDY38662 | Canola | cytosol | 91.68 | 93.99 |
| AT1G80350.1 | Thale cress | cytosol | 92.44 | 93.5 |
| PGSC0003DMT400042654 | Potato | cytosol | 81.85 | 83.59 |
| Solyc06g066810.2.1 | Tomato | cytosol | 81.47 | 83.2 |
| VIT_09s0002g05260.t01 | Wine grape | cytosol | 81.66 | 82.92 |
| KRH44395 | Soybean | cytosol | 80.91 | 80.3 |
| KRH47511 | Soybean | cytosol | 80.53 | 80.23 |
| Os01t0683100-01 | Rice | extracellular | 78.26 | 79.77 |
| Zm00001d011611_P005 | Maize | cytosol | 77.5 | 79.46 |
| EES01274 | Sorghum | cytosol | 77.5 | 79.0 |
| KRH09800 | Soybean | cytosol | 71.27 | 78.87 |
| HORVU3Hr1G063300.1 | Barley | cytosol | 77.13 | 78.31 |
| TraesCS3B01G299100.1 | Wheat | cytosol | 77.13 | 78.31 |
| TraesCS3D01G265900.1 | Wheat | cytosol | 77.13 | 78.31 |
| TraesCS3A01G265700.1 | Wheat | cytosol | 76.94 | 78.12 |
| KXG19781 | Sorghum | cytosol | 68.24 | 67.86 |
| GSMUA_Achr4P00810_001 | Banana | cytosol | 76.56 | 66.28 |
| Zm00001d043841_P003 | Maize | cytosol | 77.5 | 45.35 |
| CDY17260 | Canola | cytosol | 29.68 | 40.99 |
| CDX84641 | Canola | cytosol | 28.73 | 40.53 |
| CDX84306 | Canola | cytosol | 29.49 | 40.41 |
| CDX79566 | Canola | cytosol | 28.54 | 40.16 |
| CDY18925 | Canola | plastid | 27.03 | 39.5 |
| CDX95077 | Canola | cytosol | 30.62 | 37.59 |
| CDX93578 | Canola | cytosol | 30.43 | 37.44 |
| CDX71438 | Canola | cytosol | 29.3 | 36.13 |
| CDY04504 | Canola | cytosol | 29.11 | 35.65 |
| CDX83275 | Canola | cytosol | 29.11 | 35.57 |
| CDY31186 | Canola | cytosol | 29.11 | 35.48 |
| CDX74745 | Canola | cytosol | 28.36 | 31.58 |
| CDY37046 | Canola | cytosol | 28.92 | 29.94 |
| CDY30236 | Canola | endoplasmic reticulum | 20.6 | 27.81 |
| CDY55344 | Canola | endoplasmic reticulum | 20.6 | 27.81 |
| CDY19035 | Canola | endoplasmic reticulum | 20.6 | 27.81 |
| CDY38752 | Canola | endoplasmic reticulum | 20.23 | 27.72 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 20.42 | 27.55 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 20.23 | 27.37 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 20.23 | 27.37 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 20.04 | 27.25 |
| CDY14372 | Canola | endoplasmic reticulum | 20.04 | 26.7 |
| CDY20251 | Canola | endoplasmic reticulum | 20.23 | 26.62 |
| CDY24618 | Canola | endoplasmic reticulum | 13.8 | 25.98 |
| CDY34176 | Canola | plastid | 31.19 | 25.46 |
| CDY28494 | Canola | plastid | 31.0 | 25.31 |
| CDX92656 | Canola | cytosol | 19.85 | 24.36 |
| CDY27380 | Canola | nucleus | 29.49 | 21.02 |
| CDX96166 | Canola | cytosol | 25.14 | 19.59 |
| CDY49165 | Canola | extracellular, plasma membrane | 26.28 | 17.8 |
| CDY19639 | Canola | extracellular, vacuole | 26.65 | 17.56 |
| CDY56163 | Canola | extracellular, vacuole | 26.28 | 17.27 |
| CDY51824 | Canola | extracellular, plasma membrane | 26.09 | 17.12 |
| CDY08360 | Canola | endoplasmic reticulum | 25.14 | 16.0 |
| CDY38192 | Canola | plasma membrane | 24.95 | 15.88 |
| CDY32485 | Canola | plastid | 29.49 | 14.16 |
| CDX91317 | Canola | plastid | 27.98 | 13.99 |
| CDX90936 | Canola | plastid | 28.73 | 13.89 |
| CDY45052 | Canola | mitochondrion | 25.9 | 13.71 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 25.9 | 13.71 |
| CDX89214 | Canola | extracellular, plasma membrane | 19.47 | 13.59 |
| CDY33415 | Canola | cytosol, mitochondrion | 25.71 | 13.39 |
| CDX97266 | Canola | plastid | 28.17 | 13.17 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 25.9 | 13.16 |
| CDX89933 | Canola | plastid | 28.54 | 13.06 |
| CDY18129 | Canola | cytosol, plastid | 28.73 | 12.52 |
| CDY18018 | Canola | plastid | 28.73 | 12.46 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.45 | 12.12 |
| CDY50381 | Canola | plastid | 27.41 | 12.07 |
| CDY22053 | Canola | plastid | 27.41 | 11.8 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.69 | 11.79 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.5 | 11.7 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:13.4.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078CW40 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDX79393 | ProteinID:CDX79393 | ProteinID:CDX79393.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008568 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0051013 |
| EnsemblPlantsGene:GSBRNA2T00132101001 | InterPro:KATNA1 | HAMAP:MF_03023 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF09336 |
| ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF19 | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI0004EDE7F7 |
| InterPro:Vps4_C | SEG:seg | : | : | : | : |
Description
BnaC06g19100D
Coordinates
chrLK031817:+:1828487..1831319
Molecular Weight (calculated)
57655.6 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.585
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGTSSNNSL AGLQDHLKLA REYALEGSYD TSVIFFDGAI AQINKHLNSL DDATSRTKWM NVKKAVMEET EVVKQLDAER RAFKEAPTGR SRPSSPPINS
101: TKSSSFVFQP LDEYPNSSSS SGAPIDDPDV WRPPTRDVAS RRPARAGQSG MRKSPNDGAW ARGGPTTRAA PASRGGRGGK SAAASARSSA VGKKGAASKS
201: PKPESTNGDG EDGKSKRGLY EGPDEDLAAM LERDVLDSTP GVHWDDVAGL SEAKRLLEEA VVLPLWMPEY FQGIRRPWKG VLMFGPPGTG KTLLAKAVAT
301: ECGTTFFNVS SATLASKWRG ESERMVRCLF DLARAYAPST IFIDEIDSLC NSRGGSGEHE SSRRVKSELL VQVDGVSNTA TNEDGSRKIV MVLAATNFPW
401: DIDEALRRRL EKRIYIPLPD LESRKALINI NLRTVEVASD VNIEDVARRT EGYSGDDLTN VCRDASMNGM RRKIAGKTRD EIKNMSKDDI SNDPVAMCDF
501: EEAIRKVQPS VSSSDIEKHE KWLSEFGSA
101: TKSSSFVFQP LDEYPNSSSS SGAPIDDPDV WRPPTRDVAS RRPARAGQSG MRKSPNDGAW ARGGPTTRAA PASRGGRGGK SAAASARSSA VGKKGAASKS
201: PKPESTNGDG EDGKSKRGLY EGPDEDLAAM LERDVLDSTP GVHWDDVAGL SEAKRLLEEA VVLPLWMPEY FQGIRRPWKG VLMFGPPGTG KTLLAKAVAT
301: ECGTTFFNVS SATLASKWRG ESERMVRCLF DLARAYAPST IFIDEIDSLC NSRGGSGEHE SSRRVKSELL VQVDGVSNTA TNEDGSRKIV MVLAATNFPW
401: DIDEALRRRL EKRIYIPLPD LESRKALINI NLRTVEVASD VNIEDVARRT EGYSGDDLTN VCRDASMNGM RRKIAGKTRD EIKNMSKDDI SNDPVAMCDF
501: EEAIRKVQPS VSSSDIEKHE KWLSEFGSA
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
Arabidopsis Description
AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.