Factsheet for Bra003561.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57698	Canola	cytosol	99.06	99.06
CDX79393	Canola	cytosol	97.74	98.11
Bra008479.1-P	Field mustard	cytosol	92.28	92.8
AT1G80350.1	Thale cress	cytosol	91.34	92.73
PGSC0003DMT400042654	Potato	cytosol	81.17	83.2
Solyc06g066810.2.1	Tomato	cytosol	80.98	83.01
VIT_09s0002g05260.t01	Wine grape	cytosol	81.17	82.73
KRH47511	Soybean	cytosol	79.85	79.85
KRH44395	Soybean	cytosol	80.04	79.74
Os01t0683100-01	Rice	extracellular	77.59	79.38
KRH09800	Soybean	cytosol	71.19	79.08
Zm00001d011611_P005	Maize	cytosol	76.84	79.07
EES01274	Sorghum	cytosol	76.84	78.61
TraesCS3D01G265900.1	Wheat	cytosol	76.46	77.93
TraesCS3B01G299100.1	Wheat	cytosol	76.46	77.93
HORVU3Hr1G063300.1	Barley	cytosol	76.46	77.93
TraesCS3A01G265700.1	Wheat	cytosol	76.27	77.74
KXG19781	Sorghum	cytosol	67.42	67.29
GSMUA_Achr4P00810_001	Banana	cytosol	75.52	65.63
Zm00001d043841_P003	Maize	cytosol	76.84	45.13
Bra005414.1-P	Field mustard	cytosol	29.76	40.31
Bra004917.1-P	Field mustard	cytosol	22.6	37.62
Bra018640.1-P	Field mustard	cytosol	30.13	37.21
Bra000503.1-P	Field mustard	cytosol	29.0	35.57
Bra012009.1-P	Field mustard	cytosol	28.81	35.33
Bra039332.1-P	Field mustard	cytosol	25.05	30.43
Bra026316.1-P	Field mustard	endoplasmic reticulum	20.53	27.81
Bra019030.1-P	Field mustard	endoplasmic reticulum, plasma membrane	20.34	27.55
Bra029063.1-P	Field mustard	endoplasmic reticulum	20.15	27.37
Bra003048.1-P	Field mustard	endoplasmic reticulum	20.15	26.95
Bra022979.1-P	Field mustard	plastid	28.63	26.34
Bra032982.1-P	Field mustard	plastid	31.45	25.77
Bra003102.1-P	Field mustard	extracellular, plasma membrane	26.55	17.15
Bra029104.1-P	Field mustard	extracellular, plasma membrane	25.99	16.77
Bra024235.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.42	16.44
Bra026293.1-P	Field mustard	endoplasmic reticulum, extracellular	25.24	16.16
Bra027756.1-P	Field mustard	endoplasmic reticulum	25.24	16.13
Bra038230.1-P	Field mustard	cytosol, mitochondrion, plastid	26.18	14.01
Bra014239.1-P	Field mustard	mitochondrion	26.18	13.91
Bra032579.1-P	Field mustard	plastid	28.25	13.08
Bra018548.1-P	Field mustard	plastid	28.81	12.55
Bra000878.1-P	Field mustard	plastid	28.44	12.06
Bra036265.1-P	Field mustard	plastid	27.31	11.24
Bra033356.1-P	Field mustard	cytosol, plastid	28.63	10.19

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra003561	EnsemblPlants:Bra003561.1	EnsemblPlants:Bra003561.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150
GO:GO:0008568	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0051013	InterPro:KATNA1
UniProt:M4CH78	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00025412F8	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

AT1G80350 (E=9e-239) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA07:-:13795102..13797531

Molecular Weight (calculated)

57751.7 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.577

Length

531 amino acids

Sequence
(BLAST)

001: MVGSTSSNNS LSGLQDHLKL AREYALEGSY DTSVIFFDGA IAQINKHLNS LDDATSRTKW MNVKKAVMEE TEVVKQLDAE RRAFKEAPTG RSRPSSPPIN
101: STKSSSFVFQ PLDEYPTSSS SSGAPIDDPD VWRPPTRDVT SRRPARAGQS GMRKSPNDGA WARGGGPTTR AAPATRGGRG GKSAAASARS SAVGKKGAAS
201: KSTKPESTSG DGEDGKSKRG LYDGPDEDLA AMLERDVLDS TPGVHWDDVA GLSEAKRLLE EAVVLPLWMP EYFQGIRRPW KGVLMFGPPG TGKTLLAKAV
301: ATECGTTFFN VSSATLASKW RGESERMVRC LFDLARAYAP SAIFIDEIDS LCNSRGGSGE HESSRRVKSE LLVQVDGVSN TATNEDGSRK IVMVLAATNF
401: PWDIDEALRR RLEKRIYIPL PDLESRKALI NINLRTVEVA SDVNIEDVAR RTEGYSGDDL TNVCRDASMN GMRRKIAGKT RDEIKNMSKD DISNDPVAMC
501: DFEEAIKKVQ PSVSSSDIEK HEKWLSEFGS A

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.