Factsheet for Bra008479.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37590	Canola	cytosol	96.78	100.0
AT1G80350.1	Thale cress	cytosol	91.67	92.54
Bra003561.1-P	Field mustard	cytosol	92.8	92.28
PGSC0003DMT400042654	Potato	cytosol	82.58	84.17
Solyc06g066810.2.1	Tomato	cytosol	82.01	83.59
VIT_09s0002g05260.t01	Wine grape	cytosol	81.06	82.15
KRH47511	Soybean	cytosol	80.49	80.04
KRH44395	Soybean	cytosol	80.49	79.74
Zm00001d011611_P005	Maize	cytosol	77.84	79.65
KRH09800	Soybean	cytosol	71.97	79.5
Os01t0683100-01	Rice	extracellular	78.03	79.38
EES01274	Sorghum	cytosol	77.84	79.19
TraesCS3B01G299100.1	Wheat	cytosol	77.46	78.5
TraesCS3D01G265900.1	Wheat	cytosol	77.46	78.5
HORVU3Hr1G063300.1	Barley	cytosol	77.46	78.5
TraesCS3A01G265700.1	Wheat	cytosol	77.27	78.31
KXG19781	Sorghum	cytosol	68.18	67.67
GSMUA_Achr4P00810_001	Banana	cytosol	76.7	66.28
Zm00001d043841_P003	Maize	cytosol	77.84	45.46
Bra005414.1-P	Field mustard	cytosol	30.3	40.82
Bra004917.1-P	Field mustard	cytosol	22.54	37.3
Bra018640.1-P	Field mustard	cytosol	30.3	37.21
Bra000503.1-P	Field mustard	cytosol	29.17	35.57
Bra012009.1-P	Field mustard	cytosol	28.98	35.33
Bra039332.1-P	Field mustard	cytosol	24.62	29.75
Bra022979.1-P	Field mustard	plastid	29.73	27.21
Bra026316.1-P	Field mustard	endoplasmic reticulum	20.08	27.04
Bra019030.1-P	Field mustard	endoplasmic reticulum, plasma membrane	20.08	27.04
Bra029063.1-P	Field mustard	endoplasmic reticulum	19.89	26.85
Bra003048.1-P	Field mustard	endoplasmic reticulum	19.89	26.45
Bra032982.1-P	Field mustard	plastid	31.44	25.62
Bra003102.1-P	Field mustard	extracellular, plasma membrane	26.7	17.15
Bra029104.1-P	Field mustard	extracellular, plasma membrane	25.95	16.65
Bra024235.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.0	16.08
Bra026293.1-P	Field mustard	endoplasmic reticulum, extracellular	25.0	15.92
Bra027756.1-P	Field mustard	endoplasmic reticulum	24.81	15.76
Bra038230.1-P	Field mustard	cytosol, mitochondrion, plastid	26.14	13.91
Bra014239.1-P	Field mustard	mitochondrion	25.95	13.71
Bra032579.1-P	Field mustard	plastid	27.84	12.82
Bra018548.1-P	Field mustard	plastid	28.22	12.22
Bra000878.1-P	Field mustard	plastid	28.79	12.14
Bra036265.1-P	Field mustard	plastid	27.27	11.16
Bra033356.1-P	Field mustard	cytosol, plastid	28.41	10.06

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra008479	EnsemblPlants:Bra008479.1	EnsemblPlants:Bra008479.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150
GO:GO:0008568	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0051013	InterPro:KATNA1
UniProt:M4CW82	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002546C48	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

AT1G80350 (E=1e-247) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA02:+:15892787..15895211

Molecular Weight (calculated)

57700.8 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.596

Length

528 amino acids

Sequence
(BLAST)

001: MGSSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGALAQ INKHLNSVDD PMTRTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRSR AASPPINSTR
101: SSFVFQPLDE YPTSSSSSGA PMDDPDVWRP PTRDVSTRRP ARPGMRKSPQ DGAWARAGAG AAGPTTRTTP PSRGGRGSKS AAASARSSAS GKKGPASKST
201: KPDSTNGDAE DGKSKRGLYE GPDEDLAAML ERDVLDSTPG VRWDDVAGLS EAKRLLEEAV VLPLWMPEYF QGIRRPWKGV LMFGPPGTGK TLLAKAVATE
301: CGTTFFNVSS ATLASKWRGE SERMVRCLFD LARAYAPSTI FIDEIDSLCN SRGGSGEHES SRRVKSELLV QVDGVSNTAT NEDGSRKIVM VLAATNFPWD
401: IDEALRRRLE KRIYIPLPDL ESRKALININ LRTVEVASDV NIEDVARRTE GYSGDDLTNV CRDASMNGMR RKIAGKTRDE IKNMSKDDIS NDPVAMCDFE
501: EAIKKVQPSV SSSDIEKHEK WFSEFGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.