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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • endoplasmic reticulum 4
  • nucleus 1
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20251 Canola endoplasmic reticulum 100.0 98.76
AT5G53540.1 Thale cress endoplasmic reticulum 84.63 83.37
Bra029063.1-P Field mustard endoplasmic reticulum 80.35 81.59
Bra019030.1-P Field mustard endoplasmic reticulum, plasma membrane 78.84 79.85
Bra026316.1-P Field mustard endoplasmic reticulum 77.58 78.57
Solyc03g082630.2.1 Tomato endoplasmic reticulum 73.3 77.19
PGSC0003DMT400047633 Potato endoplasmic reticulum 73.05 76.72
KRH53570 Soybean endoplasmic reticulum, plasma membrane 74.56 75.51
KRH64362 Soybean endoplasmic reticulum, plasma membrane 73.3 74.23
Solyc06g053160.2.1 Tomato endoplasmic reticulum, plasma membrane 73.05 73.98
PGSC0003DMT400013963 Potato endoplasmic reticulum 72.29 73.21
KRH15897 Soybean endoplasmic reticulum 71.28 72.56
KXG20883 Sorghum endoplasmic reticulum 70.53 71.61
Os06t0714500-01 Rice plasma membrane 70.53 71.25
TraesCS7B01G287800.1 Wheat golgi 66.75 71.05
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 66.5 70.97
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 69.02 70.62
GSMUA_Achr11P... Banana endoplasmic reticulum 69.02 70.62
Zm00001d014775_P002 Maize plastid 69.52 70.59
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 66.25 70.51
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 69.77 70.3
HORVU7Hr1G091480.2 Barley plastid 68.51 62.96
Zm00001d036410_P002 Maize plastid 68.77 57.35
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 72.54 37.31
Bra004917.1-P Field mustard cytosol 24.43 30.41
Bra005414.1-P Field mustard cytosol 27.71 28.06
Bra018640.1-P Field mustard cytosol 27.71 25.58
Bra000503.1-P Field mustard cytosol 27.46 25.17
Bra012009.1-P Field mustard cytosol 27.46 25.17
Bra039332.1-P Field mustard cytosol 24.94 22.65
Bra003561.1-P Field mustard cytosol 26.95 20.15
Bra008479.1-P Field mustard cytosol 26.45 19.89
Bra022979.1-P Field mustard plastid 28.46 19.58
Bra027756.1-P Field mustard endoplasmic reticulum 39.04 18.65
Bra003102.1-P Field mustard extracellular, plasma membrane 38.54 18.61
Bra029104.1-P Field mustard extracellular, plasma membrane 38.29 18.47
Bra032982.1-P Field mustard plastid 29.72 18.21
Bra024235.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 37.53 18.15
Bra026293.1-P Field mustard endoplasmic reticulum, extracellular 36.78 17.61
Bra014239.1-P Field mustard mitochondrion 36.27 14.41
Bra038230.1-P Field mustard cytosol, mitochondrion, plastid 35.77 14.31
Bra018548.1-P Field mustard plastid 41.56 13.54
Bra032579.1-P Field mustard plastid 38.79 13.43
Bra000878.1-P Field mustard plastid 41.31 13.1
Bra036265.1-P Field mustard plastid 41.81 12.87
Bra033356.1-P Field mustard cytosol, plastid 42.07 11.2
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra003048EnsemblPlants:Bra003048.1EnsemblPlants:Bra003048.1-PGO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016021UniProt:M4CFR6InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23074PANTHER:PTHR23074:SF20SMART:SM00382SUPFAM:SSF52540
TMHMM:TMhelixUniParc:UPI0002543B04SEG:seg:::
Description
AT5G53540 (E=2e-181) | MSP1 protein, putative / intramitochondrial sorting protein, putative
Coordinates
chrA10:-:5712302..5713839
Molecular Weight (calculated)
44271.0 Da
IEP (calculated)
6.202
GRAVY (calculated)
-0.290
Length
397 amino acids
Sequence
(BLAST)
001: MRRSSAKRDT SFLEQLILYV AGAAFTSLSL YVCARHFDPN RDAATKALKH KRELSKRLGR PLIQTNQYED VIACDVINPQ NIDVEFDSIG GLESIKQALY
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIAKESGAVF INVKVSNLMS KWFGDAQKLV AAVFSLAEKL QPAIIFIDEV DSFLGQRRAT
201: DNEAMANMKT EFMALWDGFT TDQNARVMVL AATNRPSELD EAILRRFPQA FEIGMPDRKE RAQILEVVLK GERVEPGIDY DRIAGLCEDY TGSDIFELCK
301: KAAYFPIREI LEEEKRGRQV SVPRPLTQFD LEKVLATSKK TQVAASEYSG SSSHASVWRS PRDSEEVQAA INGISKLFTP RIVNHQSDSQ DPEGDSE
Best Arabidopsis Sequence Match ( AT5G53540.1 )
(BLAST)
001: MKRSSGRKDS NFIEQLILYV ASAALSSLVL YVGLRQLDPN RDAAKKSLEH KREIAKRLGR PLIQTNQYED VIACDVINPL HIDVEFGSIG GLESIKQALY
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIARESEAVF INVKVSNLMS KWFGDAQKLV SAVFSLAYKL QPAIIFIDEV DSFLGQRRST
201: DNEAMSNMKT EFMALWDGFT TDQNARVMVL AATNRPSELD EAILRRFPQS FEIGMPDCQE RAQILKVVLK GESVESDINY DRIARLCEDY TGSDIFELCK
301: KAAYFPIREI LEAEKEGKRV SVPRPLTQLD LEKVLATSKK TQVAASEYTG LSSQSSVWGS PSNADEVQAA INGISKLFVS QLRNIQPDSQ DSYQQHPSEG
401: DSE
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FJC9]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.