Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- endoplasmic reticulum 4
- nucleus 1
- extracellular 3
- golgi 3
- plasma membrane 3
- vacuole 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 98.21 | 98.21 |
| PGSC0003DMT400047633 | Potato | endoplasmic reticulum | 82.4 | 85.45 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 81.12 | 81.12 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 81.12 | 81.12 |
| KRH15897 | Soybean | endoplasmic reticulum | 80.61 | 81.03 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 80.36 | 80.56 |
| AT4G27680.1 | Thale cress | endoplasmic reticulum, plasma membrane | 81.63 | 80.4 |
| Bra019030.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 80.36 | 80.36 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 80.1 | 80.31 |
| CDY19035 | Canola | endoplasmic reticulum | 80.1 | 80.1 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 80.1 | 80.1 |
| CDY30236 | Canola | endoplasmic reticulum | 79.85 | 79.85 |
| CDY55344 | Canola | endoplasmic reticulum | 79.85 | 79.85 |
| Bra026316.1-P | Field mustard | endoplasmic reticulum | 79.85 | 79.85 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 76.53 | 77.32 |
| GSMUA_Achr4P05220_001 | Banana | endoplasmic reticulum | 75.77 | 76.55 |
| AT5G53540.1 | Thale cress | endoplasmic reticulum | 76.28 | 74.19 |
| TraesCS7D01G381400.1 | Wheat | endoplasmic reticulum | 70.15 | 73.92 |
| TraesCS7B01G287800.1 | Wheat | golgi | 70.15 | 73.73 |
| TraesCS7A01G384900.1 | Wheat | endoplasmic reticulum | 70.15 | 73.73 |
| Os06t0714500-01 | Rice | plasma membrane | 73.21 | 73.03 |
| PGSC0003DMT400031598 | Potato | endoplasmic reticulum | 66.84 | 72.98 |
| Zm00001d014775_P002 | Maize | plastid | 72.7 | 72.89 |
| CDY14372 | Canola | endoplasmic reticulum | 73.47 | 72.54 |
| Bra003048.1-P | Field mustard | endoplasmic reticulum | 73.21 | 72.29 |
| HORVU0Hr1G021880.1 | Barley | endoplasmic reticulum | 72.45 | 72.08 |
| KXG20883 | Sorghum | endoplasmic reticulum | 71.68 | 71.87 |
| CDY20251 | Canola | endoplasmic reticulum | 73.47 | 71.64 |
| CDY38752 | Canola | endoplasmic reticulum | 70.15 | 71.24 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 68.62 | 69.15 |
| Bra029063.1-P | Field mustard | endoplasmic reticulum | 68.37 | 68.54 |
| HORVU7Hr1G091480.2 | Barley | plastid | 71.43 | 64.81 |
| Zm00001d036410_P002 | Maize | plastid | 70.41 | 57.98 |
| VIT_16s0098g01260.t01 | Wine grape | endoplasmic reticulum | 79.59 | 40.41 |
| PGSC0003DMT400054532 | Potato | cytosol | 26.28 | 26.55 |
| PGSC0003DMT400071442 | Potato | cytosol | 21.68 | 26.07 |
| PGSC0003DMT400019119 | Potato | cytosol | 14.03 | 25.35 |
| PGSC0003DMT400019113 | Potato | cytosol | 27.3 | 24.77 |
| PGSC0003DMT400050194 | Potato | cytosol | 27.04 | 24.37 |
| PGSC0003DMT400042654 | Potato | cytosol | 27.04 | 20.46 |
| PGSC0003DMT400031731 | Potato | cytosol, endoplasmic reticulum | 41.07 | 19.3 |
| PGSC0003DMT400051401 | Potato | endoplasmic reticulum | 39.8 | 18.8 |
| PGSC0003DMT400052226 | Potato | nucleus | 28.83 | 16.92 |
Protein Annotations
| Gene3D:1.10.8.60 | EntrezGene:102581640 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | UniProt:M1A3J7 | InterPro:P-loop_NTPase | PFAM:PF00004 | EnsemblPlantsGene:PGSC0003DMG400005469 |
| PGSC:PGSC0003DMG400005469 | EnsemblPlants:PGSC0003DMT400013963 | ScanProsite:PS00674 | PFscan:PS51257 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF20 |
| SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0002957285 | RefSeq:XP_006367358.1 | RefSeq:XP_006367359.1 |
Description
26S proteasome regulatory particle chain RPT6 [Source:PGSC_GENE;Acc:PGSC0003DMG400005469]
Coordinates
chr6:-:38738668..38745902
Molecular Weight (calculated)
43516.4 Da
IEP (calculated)
5.569
GRAVY (calculated)
-0.204
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGSSETKL LQELILYAAS AALSCLVLFV GLRQLDPNRE ASKKALEHKK EIAKRLGRPL IQTNPYEDVI ACDVVNPDHI DVEFNSIGGL ESIKQALCEL
101: VILPMRRPEL FSHGKLLGPQ KGVLLYGPPG TGKTMLAKAI AKESGAVFIN VRISNLMSKW FGDAQKLVAA VFSLAHKLQP AIIFIDEVDS FLGQRKATDH
201: EALTNMKTEF MALWDGFTTD QSARVMVLAA TNRPSELDEA ILRRLPQAFE IGFPDRKERA EILKVILRGE RVEDNIDYDR IASLCDGYTG SDLFELCKKA
301: AYFPIRDLLN DEKSGKPSEE PRPLSELDLE KVIATSKKTQ VAANEYNSLR SQLVGLSRQT ETDDYPVQAA ISELSRLVVS QILNLQAENQ DS
101: VILPMRRPEL FSHGKLLGPQ KGVLLYGPPG TGKTMLAKAI AKESGAVFIN VRISNLMSKW FGDAQKLVAA VFSLAHKLQP AIIFIDEVDS FLGQRKATDH
201: EALTNMKTEF MALWDGFTTD QSARVMVLAA TNRPSELDEA ILRRLPQAFE IGFPDRKERA EILKVILRGE RVEDNIDYDR IASLCDGYTG SDLFELCKKA
301: AYFPIRDLLN DEKSGKPSEE PRPLSELDLE KVIATSKKTQ VAANEYNSLR SQLVGLSRQT ETDDYPVQAA ISELSRLVVS QILNLQAENQ DS
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [plasma membrane,endoplasmic reticulum]
SUBAcon: [plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.