Factsheet for VIT_16s0098g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	41.19	81.12
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	40.93	80.61
AT4G27680.1	Thale cress	endoplasmic reticulum, plasma membrane	41.06	79.65
PGSC0003DMT400013963	Potato	endoplasmic reticulum	40.41	79.59
CDY71574	Canola	endoplasmic reticulum, plasma membrane	40.41	79.59
PGSC0003DMT400047633	Potato	endoplasmic reticulum	38.86	79.37
Bra026316.1-P	Field mustard	endoplasmic reticulum	40.28	79.34
CDY55344	Canola	endoplasmic reticulum	40.28	79.34
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	40.28	79.34
CDY30236	Canola	endoplasmic reticulum	40.28	79.34
Bra019030.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.28	79.34
CDY29857	Canola	endoplasmic reticulum, plasma membrane	40.16	79.28
CDX92836	Canola	endoplasmic reticulum, plasma membrane	40.16	79.28
CDY19035	Canola	endoplasmic reticulum	39.9	78.57
KRH15897	Soybean	endoplasmic reticulum	39.64	78.46
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	38.21	78.25
GSMUA_Achr11P...	Banana	endoplasmic reticulum	38.47	76.55
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	38.34	76.29
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	36.27	75.27
TraesCS7A01G384900.1	Wheat	endoplasmic reticulum	36.27	75.07
TraesCS7B01G287800.1	Wheat	golgi	36.27	75.07
AT5G53540.1	Thale cress	endoplasmic reticulum	38.47	73.7
Zm00001d014775_P002	Maize	plastid	37.18	73.4
Os06t0714500-01	Rice	plasma membrane	37.31	73.28
KXG20883	Sorghum	endoplasmic reticulum	37.05	73.15
CDY14372	Canola	endoplasmic reticulum	37.44	72.8
Bra003048.1-P	Field mustard	endoplasmic reticulum	37.31	72.54
CDY20251	Canola	endoplasmic reticulum	37.44	71.89
HORVU0Hr1G021880.1	Barley	endoplasmic reticulum	36.66	71.83
CDY38752	Canola	endoplasmic reticulum	34.72	69.43
CDY47077	Canola	endoplasmic reticulum, plasma membrane	34.2	67.87
Bra029063.1-P	Field mustard	endoplasmic reticulum	34.07	67.26
HORVU7Hr1G091480.2	Barley	plastid	36.01	64.35
Zm00001d036410_P002	Maize	plastid	36.27	58.82
VIT_10s0003g03500.t01	Wine grape	cytosol	15.16	29.47
VIT_13s0106g00490.t01	Wine grape	cytosol	13.73	24.42
VIT_15s0048g01720.t01	Wine grape	cytosol	15.29	24.03
VIT_06s0080g00160.t01	Wine grape	extracellular	13.47	24.02
VIT_09s0002g05260.t01	Wine grape	cytosol	14.38	21.31
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	20.6	20.33
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	21.11	20.3
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	21.5	19.83
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	21.24	19.62
VIT_14s0068g02130.t01	Wine grape	nucleus	15.16	17.52
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	20.85	16.1
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	21.24	13.49
VIT_07s0005g00200.t01	Wine grape	plastid	21.37	12.82

Protein Annotations

KEGG:00230+3.6.1.3	Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:AAA_N_dom
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CCB48072	ProteinID:CCB48072.1	UniProt:F6H749	EMBL:FN595247
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF14363	PRINTS:PR00830	ScanProsite:PS00674	PFscan:PS51257	PANTHER:PTHR23070	PANTHER:PTHR23070:SF13
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000210A6A6	ArrayExpress:VIT_16s0098g01260	EnsemblPlantsGene:VIT_16s0098g01260	EnsemblPlants:VIT_16s0098g01260.t01
unigene:Vvi.23769	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:21519361..21527269

Molecular Weight (calculated)

86421.1 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.253

Length

772 amino acids

Sequence
(BLAST)

001: MGETRFLQEL VLYAASAALS CLVLFAGLRH LDPNRESSKK ALEHRKEIAK RLGRPLIQTN SYEDVIACDV INPDHIDVEF DSIGGLETIK QALVELVILP
101: LRRPELFSHG KLLGPQKGVL LYGPPGTGKT MLAKAIAKES GAVFINVRIS NLMSKWFGDA QKLVAAVFSL AYKLQPAIIF IDEVDTFLGQ RRTTDHEAMA
201: NMKTEFMALW DGFTTDQNAR VMVLAATNRP SELDEAILRR LPQAFEIGIP DRRERVEILK VVLKGEKVAD DINYDRIASL CEGYTGSDIL ELCKKAAYFP
301: IRELLDDEKN GKPSPAPRPL SQLDLEKVLA TSRKTKVAAS EYTGLNPQSS GFNLQLENEL YRKLSAYINS LASVEDSDFA NLVTGSRSND VVLSLDPNQT
401: VFDSYLGARV AWTNVVGESD GRRCFVLRIR KKDKRRILRP YLQHILAKYE EFEKELKLYI NCESRRLSDG RWRSVPFTHQ ATMETVAMDS DLKSKVKSDL
501: ELFLKSKQYY QRLGRVWKRS YLLHGAPGTG KSSFVAAMAK LLCYDVYDVD LSQVSDDADL KLLLLQTTPR SLILIEDLDR FLIDKSTTVS LPGVLNFMDG
601: VLSCCGEERV MVFTMNSPDQ IDPTVLRPGR IDVHVQFGLC DFSSFKMLAD SHLGIKEHRL FPQVEEIFQT GASLCPAEIG EIMTSNRNSA TRALKSVINA
701: LQTNTANKIR LTQSSSGRST EESAEPGGVI CRESVHTVRE FRKLYGLLRR SGRKEEPLDL GSTDKDAPRN GS

Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)

001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR

Arabidopsis Description

26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.