Factsheet for VIT_15s0048g01720.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004917.1-P	Field mustard	cytosol	49.29	75.86
CDY18925	Canola	plastid	55.8	75.69
Solyc01g094150.2.1	Tomato	nucleus	74.95	74.95
KRH40573	Soybean	cytosol, plastid	74.13	74.9
KRH00594	Soybean	cytosol, plastid	73.93	73.93
CDX74745	Canola	cytosol	70.47	72.84
AT2G45500.5	Thale cress	cytosol	72.3	71.43
TraesCS7D01G060200.1	Wheat	cytosol	67.21	69.18
TraesCS4A01G422400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.01	68.54
Bra039332.1-P	Field mustard	cytosol	60.9	68.42
TraesCS7A01G065800.1	Wheat	cytosol	66.6	68.12
Os06t0130000-02	Rice	cytosol	66.8	67.35
EER87773	Sorghum	cytosol	67.21	67.35
Zm00001d045483_P002	Maize	cytosol	67.41	66.47
CDY37046	Canola	cytosol	68.64	65.95
GSMUA_Achr10P...	Banana	cytosol	64.77	61.15
HORVU7Hr1G013190.8	Barley	plastid	67.21	59.03
CDY27380	Canola	nucleus	69.86	46.23
VIT_06s0080g00160.t01	Wine grape	extracellular	33.2	37.64
VIT_10s0003g03500.t01	Wine grape	cytosol	29.53	36.52
VIT_13s0106g00490.t01	Wine grape	cytosol	31.77	35.94
VIT_09s0002g05260.t01	Wine grape	cytosol	30.55	28.79
VIT_14s0068g02130.t01	Wine grape	nucleus	37.07	27.25
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	30.55	19.18
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	31.77	18.64
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	30.35	18.56
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	30.75	18.06
VIT_16s0098g01260.t01	Wine grape	endoplasmic reticulum	24.03	15.29
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	30.96	15.2
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	31.77	12.83
VIT_07s0005g00200.t01	Wine grape	plastid	32.38	12.35

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100264212	wikigene:100264212	Gene3D:3.40.50.300	MapMan:50.3.6
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI38792	ProteinID:CBI38792.3	UniProt:D7U7L3
EMBL:FN596739	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887
EntrezGene:LOC100264212	wikigene:LOC100264212	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF86	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846
SUPFAM:SSF52540	UniParc:UPI0001BE4FB7	ArrayExpress:VIT_15s0048g01720	EnsemblPlantsGene:VIT_15s0048g01720	EnsemblPlants:VIT_15s0048g01720.t01	RefSeq:XP_003633914
RefSeq:XP_003633914.1	RefSeq:XP_010661584.1	RefSeq:XP_019081345.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:+:15927267..15935062

Molecular Weight (calculated)

54243.8 Da

IEP (calculated)

9.587

GRAVY (calculated)

-0.386

Length

491 amino acids

Sequence
(BLAST)

001: MSFLKGIIDS LGSIFSDSTS PDEAQSSPNF SDNGAMDGVV GTGVSNQRIA YKLKGYYDLA TEEIAKAVRA EEWGLVDDAI VHYKNAQRIL IEASSTSTPS
101: FISSSEQEKV KSYRQKISKW QGQVAERLEI LIRRAGGTST NKNTLADTKP ATTSSTKSNA RTDVLQKSPL TNRRSPIMRS QSDKVVSSKP VQESGHGYDA
201: KLVEMINTVI VDRSPSVKWD DVAGLEKAKQ ALLEMVILPT KRKDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESAAT FFNVSASSLT SKWVGEGEKL
301: VRTLFMVAIS RQPSVIFMDE IDSIMSTRMT NENEASRRLK SEFLVQFDGV TSNPDDLVIV IGATNKPQEL DDAVLRRLVK RIYVPLPDEN VRRLLLKHKL
401: KGQAFSLPGG DLERLVQETE GYSGSDLQAL CEEAAMMPIR ELGTNILTVK ANQVRPLRYG DFQKAMTVIR PSLQKGKWQE LEDWNQEFGS N

Best Arabidopsis Sequence Match ( AT2G45500.1 )
(BLAST)

001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N

Arabidopsis Description

AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.