CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74745	Canola	cytosol	95.86	73.05
CDY37046	Canola	cytosol	92.82	65.75
AT2G45500.5	Thale cress	cytosol	88.95	64.79
VIT_15s0048g01720.t01	Wine grape	cytosol	75.69	55.8
KRH40573	Soybean	cytosol, plastid	74.03	55.14
TraesCS7D01G060200.1	Wheat	cytosol	71.55	54.3
KRH00594	Soybean	cytosol, plastid	73.48	54.18
TraesCS4A01G422400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.82	54.17
TraesCS7A01G065800.1	Wheat	cytosol	71.82	54.17
Os06t0130000-02	Rice	cytosol	72.1	53.59
EER87773	Sorghum	cytosol	71.55	52.86
Solyc01g094150.2.1	Tomato	nucleus	70.99	52.34
Zm00001d045483_P002	Maize	cytosol	71.82	52.21
GSMUA_Achr10P...	Banana	cytosol	68.78	47.88
HORVU7Hr1G013190.8	Barley	plastid	72.1	46.69
CDY27380	Canola	nucleus	92.82	45.28
CDX84641	Canola	cytosol	37.85	36.53
CDX79566	Canola	cytosol	37.85	36.44
CDY17260	Canola	cytosol	37.85	35.77
CDX84306	Canola	cytosol	37.57	35.23
CDX93578	Canola	cytosol	39.5	33.26
CDY31186	Canola	cytosol	39.78	33.18
CDX95077	Canola	cytosol	39.5	33.18
CDX83275	Canola	cytosol	39.23	32.79
CDY04504	Canola	cytosol	38.95	32.64
CDX71438	Canola	cytosol	38.4	32.4
CDY38752	Canola	endoplasmic reticulum	31.22	29.27
CDY47077	Canola	endoplasmic reticulum, plasma membrane	30.66	28.53
CDY14372	Canola	endoplasmic reticulum	31.22	28.46
CDY24618	Canola	endoplasmic reticulum	21.82	28.11
CDY20251	Canola	endoplasmic reticulum	31.22	28.11
CDX92836	Canola	endoplasmic reticulum, plasma membrane	29.83	27.62
CDY29857	Canola	endoplasmic reticulum, plasma membrane	29.83	27.62
CDY37590	Canola	cytosol	38.95	27.59
CDY71574	Canola	endoplasmic reticulum, plasma membrane	29.83	27.55
CDY38662	Canola	cytosol	38.95	27.33
CDY55344	Canola	endoplasmic reticulum	29.56	27.3
CDY30236	Canola	endoplasmic reticulum	29.56	27.3
CDY19035	Canola	endoplasmic reticulum	29.28	27.04
CDX79393	Canola	cytosol	39.5	27.03
CDY57698	Canola	cytosol	39.23	26.74
CDY34176	Canola	plastid	43.37	24.23
CDY28494	Canola	plastid	43.37	24.23
CDX92656	Canola	cytosol	27.35	22.97
CDX96166	Canola	cytosol	33.98	18.11
CDY49165	Canola	extracellular, plasma membrane	33.98	15.75
CDY56163	Canola	extracellular, vacuole	34.81	15.65
CDY51824	Canola	extracellular, plasma membrane	34.81	15.63
CDY19639	Canola	extracellular, vacuole	34.25	15.44
CDY38192	Canola	plasma membrane	35.36	15.4
CDY08360	Canola	endoplasmic reticulum	35.36	15.4
CDY33415	Canola	cytosol, mitochondrion	37.02	13.19
CDY45052	Canola	mitochondrion	36.19	13.11
CDY03591	Canola	cytosol, mitochondrion, plastid	36.19	13.11
CDY42204	Canola	cytosol, mitochondrion, plastid	36.74	12.78
CDX91317	Canola	plastid	35.36	12.1
CDY32485	Canola	plastid	35.91	11.8
CDX89214	Canola	extracellular, plasma membrane	24.59	11.74
CDX90936	Canola	plastid	34.53	11.43
CDX89933	Canola	plastid	35.91	11.25
CDX97266	Canola	plastid	34.53	11.05
CDY18129	Canola	cytosol, plastid	35.91	10.71
CDY50381	Canola	plastid	35.36	10.66
CDY22053	Canola	plastid	35.36	10.41
CDY18018	Canola	plastid	35.08	10.41
CDY29873	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.61	10.13
CDX92857	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.61	10.09
CDY19014	Canola	endoplasmic reticulum, extracellular	19.89	10.03
CDX89934	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078FWW8	UniProt:A0A078FWW8	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY18925	ProteinID:CDY18925	ProteinID:CDY18925.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00006130001	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF86	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0004EF24DE	InterPro:Vps4_C	SEG:seg	:	:	:

Description

BnaC04g04250DBnaC04g04250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWW8]

Coordinates

chrLK032090:+:359665..361850

Molecular Weight (calculated)

39731.7 Da

IEP (calculated)

10.332

GRAVY (calculated)

-0.388

Length

362 amino acids

Sequence
(BLAST)

001: MVYQVSERLQ ALGKRAGVGV SENKRTVPSS PSSASASSTA SNRRVSTQRT SLPRGGVGKA RSPRDATTTN PKPAKESGNG CDDKLEEMIN TTIVDRSPSV
101: KWDDVAGLDG AKQALLEMVI LPAKRRDLFT GLRRPARGLL LFGPPGNGKT MLAKAVASES QATFFNVSAS SLTSKWVGEA EKLVKTLFQV AISRQPSVIF
201: MDEIDSIMST RSISENEASR RLKSEFLIQF DGVTSNPDDL VIVIGATNKP QELDDAVLRR LVKRIYVPLP DSNVRKLLFK TKLKCQPHSL SGYSGSDLQA
301: LCEEAAMMPI RELGADILTI QANKVRPLRY DDFRKSMAVI RPSLSKSKWE ELERWNSEFG SN

Best Arabidopsis Sequence Match ( AT2G45500.1 )
(BLAST)

001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N

Arabidopsis Description

AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.