Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37590 | Canola | cytosol | 97.67 | 98.63 |
| CDX79393 | Canola | cytosol | 93.99 | 91.68 |
| CDY57698 | Canola | cytosol | 94.19 | 91.53 |
| AT1G80350.1 | Thale cress | cytosol | 92.25 | 91.01 |
| PGSC0003DMT400042654 | Potato | cytosol | 82.95 | 82.63 |
| Solyc06g066810.2.1 | Tomato | cytosol | 82.56 | 82.24 |
| VIT_09s0002g05260.t01 | Wine grape | cytosol | 82.36 | 81.57 |
| KRH47511 | Soybean | cytosol | 81.59 | 79.28 |
| KRH44395 | Soybean | cytosol | 81.59 | 78.99 |
| Zm00001d011611_P005 | Maize | cytosol | 78.68 | 78.68 |
| KRH09800 | Soybean | cytosol | 72.87 | 78.66 |
| Os01t0683100-01 | Rice | extracellular | 79.07 | 78.61 |
| EES01274 | Sorghum | cytosol | 78.88 | 78.42 |
| TraesCS3B01G299100.1 | Wheat | cytosol | 78.49 | 77.74 |
| TraesCS3D01G265900.1 | Wheat | cytosol | 78.49 | 77.74 |
| HORVU3Hr1G063300.1 | Barley | cytosol | 78.49 | 77.74 |
| TraesCS3A01G265700.1 | Wheat | cytosol | 78.29 | 77.54 |
| KXG19781 | Sorghum | cytosol | 69.19 | 67.11 |
| GSMUA_Achr4P00810_001 | Banana | cytosol | 78.29 | 66.12 |
| Zm00001d043841_P003 | Maize | cytosol | 78.68 | 44.91 |
| CDY17260 | Canola | cytosol | 30.04 | 40.47 |
| CDX84641 | Canola | cytosol | 29.26 | 40.27 |
| CDX84306 | Canola | cytosol | 29.84 | 39.9 |
| CDX79566 | Canola | cytosol | 29.07 | 39.89 |
| CDY18925 | Canola | plastid | 27.33 | 38.95 |
| CDX95077 | Canola | cytosol | 30.81 | 36.89 |
| CDX93578 | Canola | cytosol | 30.62 | 36.74 |
| CDX71438 | Canola | cytosol | 29.26 | 35.2 |
| CDY04504 | Canola | cytosol | 29.46 | 35.19 |
| CDX83275 | Canola | cytosol | 29.46 | 35.1 |
| CDY31186 | Canola | cytosol | 29.46 | 35.02 |
| CDX74745 | Canola | cytosol | 28.68 | 31.16 |
| CDY37046 | Canola | cytosol | 29.26 | 29.55 |
| CDY38752 | Canola | endoplasmic reticulum | 20.35 | 27.2 |
| CDY19035 | Canola | endoplasmic reticulum | 20.54 | 27.04 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 20.54 | 27.04 |
| CDY55344 | Canola | endoplasmic reticulum | 20.54 | 27.04 |
| CDY30236 | Canola | endoplasmic reticulum | 20.54 | 27.04 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 20.35 | 26.85 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 20.35 | 26.85 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 20.16 | 26.74 |
| CDY14372 | Canola | endoplasmic reticulum | 20.35 | 26.45 |
| CDY20251 | Canola | endoplasmic reticulum | 20.54 | 26.37 |
| CDY24618 | Canola | endoplasmic reticulum | 14.34 | 26.33 |
| CDY28494 | Canola | plastid | 31.4 | 25.0 |
| CDY34176 | Canola | plastid | 31.2 | 24.85 |
| CDX92656 | Canola | cytosol | 19.96 | 23.9 |
| CDY27380 | Canola | nucleus | 30.04 | 20.89 |
| CDX96166 | Canola | cytosol | 25.19 | 19.15 |
| CDY49165 | Canola | extracellular, plasma membrane | 26.74 | 17.67 |
| CDY19639 | Canola | extracellular, vacuole | 27.33 | 17.56 |
| CDY56163 | Canola | extracellular, vacuole | 26.74 | 17.14 |
| CDY51824 | Canola | extracellular, plasma membrane | 26.55 | 17.0 |
| CDY08360 | Canola | endoplasmic reticulum | 25.39 | 15.76 |
| CDY38192 | Canola | plasma membrane | 25.19 | 15.64 |
| CDY32485 | Canola | plastid | 29.65 | 13.88 |
| CDY45052 | Canola | mitochondrion | 26.74 | 13.81 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 26.74 | 13.81 |
| CDX91317 | Canola | plastid | 28.29 | 13.8 |
| CDX90936 | Canola | plastid | 28.88 | 13.62 |
| CDY33415 | Canola | cytosol, mitochondrion | 26.55 | 13.48 |
| CDX89214 | Canola | extracellular, plasma membrane | 19.57 | 13.32 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 26.74 | 13.26 |
| CDX97266 | Canola | plastid | 28.29 | 12.91 |
| CDX89933 | Canola | plastid | 28.88 | 12.89 |
| CDY18129 | Canola | cytosol, plastid | 29.07 | 12.36 |
| CDY18018 | Canola | plastid | 28.88 | 12.21 |
| CDY50381 | Canola | plastid | 27.71 | 11.91 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.47 | 11.84 |
| CDY22053 | Canola | plastid | 27.71 | 11.64 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.7 | 11.51 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.5 | 11.41 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:13.4.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078HLA9 | UniProt:A0A078HLA9 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDY38662 | ProteinID:CDY38662 | ProteinID:CDY38662.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008568 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00066382001 | InterPro:KATNA1 | HAMAP:MF_03023 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF19 | SMART:SM00382 | SUPFAM:SSF52540 |
| UniParc:UPI0004EEAC6A | InterPro:Vps4_C | SEG:seg | : | : | : |
Description
BnaC02g23170DKatanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:A0A078HLA9]
Coordinates
chrLK032429:-:92127..94760
Molecular Weight (calculated)
56336.2 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.570
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGALAQ INKHLNSLDD PMSRTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRSR AASPPINSTK
101: SSFVFQPLDE YPTSSSSSGA PMDDPDVWRP PTRDVSTRRP ARPGMRKSPQ DGAWARGGGG GGSKSAAASA RSSATAAAGK KGPASKSTKP DSTNGDAEDG
201: KSKRGLYEGP DEDLAAMLER DVLDSTPGVR WDDVAGLSEA KRLLEEAVVL PLWMPEYFQG IRRPWKGVLM FGPPGTGKTL LAKAVATECG TTFFNVSSAT
301: LASKWRGESE RMVRCLFDLA RAYAPSTIFI DEIDSLCNSR GGSGEHESSR RVKSELLVQV DGVSNTATNE DGSRKIVMVL AATNFPWDID EALRRRLEKR
401: IYIPLPDLES RKALININLR TVEVASDVNI EDVAKRTEGY SGDDLTNVCR DASMNGMRRK IAGKTRDEIK NMSKDDISND PVAMCDFEEA IKKVQPSVSS
501: SDIEKHEKWF SEFGSA
101: SSFVFQPLDE YPTSSSSSGA PMDDPDVWRP PTRDVSTRRP ARPGMRKSPQ DGAWARGGGG GGSKSAAASA RSSATAAAGK KGPASKSTKP DSTNGDAEDG
201: KSKRGLYEGP DEDLAAMLER DVLDSTPGVR WDDVAGLSEA KRLLEEAVVL PLWMPEYFQG IRRPWKGVLM FGPPGTGKTL LAKAVATECG TTFFNVSSAT
301: LASKWRGESE RMVRCLFDLA RAYAPSTIFI DEIDSLCNSR GGSGEHESSR RVKSELLVQV DGVSNTATNE DGSRKIVMVL AATNFPWDID EALRRRLEKR
401: IYIPLPDLES RKALININLR TVEVASDVNI EDVAKRTEGY SGDDLTNVCR DASMNGMRRK IAGKTRDEIK NMSKDDISND PVAMCDFEEA IKKVQPSVSS
501: SDIEKHEKWF SEFGSA
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
Arabidopsis Description
AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.