CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01274	Sorghum	cytosol	79.7	81.7
Zm00001d011611_P005	Maize	cytosol	78.2	80.62
Os01t0683100-01	Rice	extracellular	75.94	77.84
TraesCS3B01G299100.1	Wheat	cytosol	74.06	75.62
TraesCS3D01G265900.1	Wheat	cytosol	74.06	75.62
TraesCS3A01G265700.1	Wheat	cytosol	73.87	75.43
HORVU3Hr1G063300.1	Barley	cytosol	73.68	75.24
KRH09800	Soybean	cytosol	63.35	70.5
CDY37590	Canola	cytosol	66.92	69.67
AT1G80350.1	Thale cress	cytosol	68.42	69.6
CDY38662	Canola	cytosol	67.11	69.19
Solyc06g066810.2.1	Tomato	cytosol	67.11	68.92
VIT_09s0002g05260.t01	Wine grape	cytosol	67.48	68.91
PGSC0003DMT400042654	Potato	cytosol	66.92	68.73
CDX79393	Canola	cytosol	67.86	68.24
Bra008479.1-P	Field mustard	cytosol	67.67	68.18
CDY57698	Canola	cytosol	67.48	67.61
Bra003561.1-P	Field mustard	cytosol	67.29	67.42
KRH44395	Soybean	cytosol	67.29	67.17
KRH47511	Soybean	cytosol	66.54	66.67
GSMUA_Achr4P00810_001	Banana	cytosol	68.23	59.41
Zm00001d043841_P003	Maize	cytosol	78.95	46.46
OQU87315	Sorghum	cytosol	27.26	35.98
EES01499	Sorghum	cytosol	25.75	35.96
EES00346	Sorghum	cytosol	27.07	33.03
EER87773	Sorghum	cytosol	26.32	28.57
KXG20883	Sorghum	endoplasmic reticulum	19.36	26.34
KXG23422	Sorghum	nucleus	27.44	21.22
KXG32842	Sorghum	cytosol	25.38	17.42
EES20020	Sorghum	endoplasmic reticulum	27.07	17.1
EES00021	Sorghum	endoplasmic reticulum	25.94	16.29
KXG32925	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	25.19	16.14
EES16128	Sorghum	cytosol, plastid	25.19	14.38
EES05524	Sorghum	plastid	25.0	13.48
OQU76102	Sorghum	mitochondrion	24.25	13.33
OQU79278	Sorghum	cytosol, plastid	22.37	12.91
OQU90457	Sorghum	cytosol, plastid	25.75	12.52
EER92288	Sorghum	cytosol	26.13	12.52
KXG29076	Sorghum	plastid	27.63	11.9

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	UniProt:A0A194YJK0	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0051013	InterPro:KATNA1	EnsemblPlants:KXG19781	ProteinID:KXG19781
ProteinID:KXG19781.1	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	EnsemblPlantsGene:SORBI_3010G114200	SUPFAM:SSF52540	UniParc:UPI0007F30E7C
InterPro:Vps4_C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:12053611..12059158

Molecular Weight (calculated)

59010.4 Da

IEP (calculated)

9.501

GRAVY (calculated)

-0.488

Length

532 amino acids

Sequence
(BLAST)

001: MANHPRAALL EEYLERAREY LVEGSGCYDT SITFFNAAIV QIDKHLTTLD NNAKIRTKWL DCKNAIYEEM ELTKQLDAQL KSRKEAPGTR RSSSPPIRSN
101: NKSFVLQPLD EYPTSSPAPF DDPDVWAPPR AKATRRPSRH QSGARKSSQD GAWAHGSART GTPSQSAKPN GSKRGYAVKS SAASKSCVRK GKPSSIKAHS
201: AIFKMNTQYH HHLSLLYLCP GRLPRPDMDL AAMLEMDVLD STPGLRWDDV AGLSKAKDLL REAVQLPVWM PEYFQGIRRP CKGVLMFGPP STGKTLLAKA
301: VATECGTTFF NVSSATLASK WRGESERMVR CLFDLARAKA PSTIFIDEID SLCTSRGASG EHEASRRVKS ELLVQIDGLN NSSTTEDGQP KIVTVLAATN
401: FPWDIDEALS RRFEKRIYIP LPDFESRKAL ININLRTVQI AVDVNIDEVA RRTEGYSGDD LTNVCRDASM NGMRCKIAGK TREEIKNMSK NGIAKDPVTM
501: CDFVEALMKV QKSVSSADIE KHKKWMTVFG SA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.