CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009702_P001	Maize	endoplasmic reticulum	91.81	91.7
Os05t0584600-02	Rice	vacuole	82.19	80.94
TraesCS1A01G423100.1	Wheat	mitochondrion	81.47	80.52
TraesCS1B01G455200.1	Wheat	mitochondrion	81.35	80.21
TraesCS1D01G431700.1	Wheat	mitochondrion	81.0	80.14
HORVU1Hr1G092440.13	Barley	cytosol, golgi, mitochondrion, plastid	77.08	74.86
EES00021	Sorghum	endoplasmic reticulum	63.42	63.05
GSMUA_Achr11P...	Banana	cytosol	23.28	62.03
GSMUA_Achr11P...	Banana	cytosol	21.62	57.41
KXG32842	Sorghum	cytosol	48.93	53.16
KXG32925	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	52.02	52.77
KXG20883	Sorghum	endoplasmic reticulum	19.12	41.18
EES01499	Sorghum	cytosol	15.08	33.33
EES16128	Sorghum	cytosol, plastid	35.39	31.97
OQU87315	Sorghum	cytosol	14.96	31.27
EER87773	Sorghum	cytosol	17.22	29.59
OQU79278	Sorghum	cytosol, plastid	32.19	29.39
OQU90457	Sorghum	cytosol, plastid	36.82	28.34
EER92288	Sorghum	cytosol	36.94	28.02
EES00346	Sorghum	cytosol	14.37	27.75
KXG19781	Sorghum	cytosol	17.1	27.07
OQU76102	Sorghum	mitochondrion	31.12	27.07
EES05524	Sorghum	plastid	31.71	27.05
KXG29076	Sorghum	plastid	39.67	27.04
EES01274	Sorghum	cytosol	16.63	26.98
KXG23422	Sorghum	nucleus	19.24	23.55

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8079294	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	UniProt:C5YWJ0	ncoils:Coil	EnsemblPlants:EES20020	ProteinID:EES20020	ProteinID:EES20020.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF107	SMART:SM00382	EnsemblPlantsGene:SORBI_3009G248300
SUPFAM:SSF52540	unigene:Sbi.19576	TMHMM:TMhelix	UniParc:UPI0001A893B7	RefSeq:XP_002441590.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:58340470..58345567

Molecular Weight (calculated)

93273.7 Da

IEP (calculated)

5.777

GRAVY (calculated)

-0.479

Length

842 amino acids

Sequence
(BLAST)

001: MEQRSLLVSA LGVGVGVGLG LASAKWAVQP APNGDGFGAG GAELEAELRR LVLDGRECDV TFDEFPYYLS DQTREVLISA AFVHLKNAEL SKHIRNLSAA
101: SRAILLSGPT EPYLQSLAKA LSHYFKARLL IVDATDFSLR IQSKYGGSTK ATARNQSVTE TTFGRMSDLI GSFMAYPKKD EPRESQRRQT SNTDLRARGS
201: DGSSSTPSLR KNASVSSDMG DHASQCAGNS VRRTGSWCFE EKVLIQSLYK VMVSVSENGP IILYIRDVDH FLWKSQRTYS MFQKMLAKLS GQVLILGSRL
301: LSPDADNRDA DERISTLFPY HVDIKAPEEE THLNCWKSQI EEDTRKIQMQ DNRNHIIEVL SANDLDCDDL SSISEADTMV LSNYIEEIIV SAVSYHLIHN
401: KDPEYRNGKL MLSSKSLSHG LSIFQGGHGG KDTLKLEGTK DGLKGAPGSK KTDTVPVGEG PLPPQKPEVP DNEFEKRIRP EVILASEIGV TFDDIGALAD
501: IKESLQELVM LPLRRPDLFK GGLLKPCRGI LLFGPPGTGK TMLAKAIAND AGASFINVSM STITSKWFGE DEKNVRALFS LAAKVAPTII FVDEVDSMLG
601: QRARYGEHEA MRKIKNEFMS HWDGLLSKTG ERILVLAATN RPFDLDEAII RRFERRIMVG LPTQESRELI LRTLLSKEKI EENIDFKELA TMTEGYSGSD
701: LKNLCVTAAY RPVRELLKKE REKELERREK ESKDKAVENS EAPEAKKESS ESKDAPKSKE GSESSEDESS DSKSDSSEAK AEGEKEAAID LRPLTMEDLR
801: QAKNQVAASF ASEGAVMNEL KQWNDLYGEG GSRKKQQLTY FL

Best Arabidopsis Sequence Match ( AT4G28000.1 )
(BLAST)

001: MEQKSVLFSA LGVGVGLGIG LASGQSLGKW ANGSISAEDG LTGEKIEQEL VRQIVDGRES SVTFDEFPYY LSEKTRLLLT SAAYVHLKQS DISKHTRNLA
101: PGSKAILLSG PAEFYQQMLA KALAHYFESK LLLLDITDFS IKIQSKYGCV KKEPSHKRSI SELTMDKMSN LMGSISVLSQ KEATRGTLRR HTSGNDLHSR
201: GFDVTSQPPR LKRNASAASD MSSISSRSAT SVSASSKRSA NLCFDERLFL QSLYKVLVSI SETNPIIIYL RDVEKLCQSE RFYKLFQRLL TKLSGPVLVL
301: GSRLLEPEDD CQEVGEGISA LFPYNIEIRP PEDENQLMSW KTRFEDDMKV IQFQDNKNHI AEVLAANDLE CDDLGSICHA DTMFLSSHIE EIVVSAISYH
401: LMNNKEPEYK NGRLVISSNS LSHGLNILQE GQGCFEDSLK LDTNIDSKVE EGEGITKSES KSETTVPENK NESDTSIPAA KNECPLPPKA PEVAPDNEFE
501: KRIRPEVIPA NEIGVTFADI GSLDETKESL QELVMLPLRR PDLFKGGLLK PCRGILLFGP PGTGKTMMAK AIANEAGASF INVSMSTITS KWFGEDEKNV
601: RALFTLAAKV SPTIIFVDEV DSMLGQRTRV GEHEAMRKIK NEFMTHWDGL MSNAGDRILV LAATNRPFDL DEAIIRRFER RIMVGLPSVE SREKILRTLL
701: SKEKTENLDF QELAQMTDGY SGSDLKNFCT TAAYRPVREL IKQECLKDQE RRKREEAEKN SEEGSEAKEE VSEERGITLR PLSMEDMKVA KSQVAASFAA
801: EGAGMNELKQ WNDLYGEGGS RKKEQLSYFL

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G28000]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.