CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041083_P005	Maize	nucleus	90.41	91.74
TraesCS5D01G123800.1	Wheat	nucleus	77.47	77.47
TraesCS5B01G110300.1	Wheat	nucleus	77.18	77.18
TraesCS5A01G109500.1	Wheat	nucleus	76.31	76.31
GSMUA_Achr6P27610_001	Banana	cytosol	64.24	67.48
HORVU5Hr1G029910.10	Barley	cytosol, mitochondrion, nucleus	68.9	66.48
KRG94255	Soybean	nucleus	61.19	63.88
KRH57680	Soybean	nucleus	60.76	63.43
VIT_14s0068g02130.t01	Wine grape	nucleus	61.05	62.87
Bra032982.1-P	Field mustard	plastid	58.72	62.35
CDY28494	Canola	plastid	58.43	62.04
CDY34176	Canola	plastid	58.28	61.88
Os12t0443800-01	Rice	nucleus	34.3	61.78
AT3G27120.1	Thale cress	nucleus	57.56	58.24
PGSC0003DMT400052226	Potato	nucleus	56.4	58.08
Solyc02g094100.2.1	Tomato	nucleus	55.81	57.48
EES01499	Sorghum	cytosol	20.35	36.75
OQU87315	Sorghum	cytosol	21.37	36.48
EER87773	Sorghum	cytosol	25.87	36.33
EES00346	Sorghum	cytosol	20.64	32.57
KXG20883	Sorghum	endoplasmic reticulum	17.15	30.18
EES01274	Sorghum	cytosol	22.24	29.48
KXG19781	Sorghum	cytosol	21.22	27.44
EES20020	Sorghum	endoplasmic reticulum	23.55	19.24
EES00021	Sorghum	endoplasmic reticulum	22.97	18.65
KXG32842	Sorghum	cytosol	20.64	18.32
KXG32925	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	21.51	17.83
EES16128	Sorghum	cytosol, plastid	22.82	16.85
OQU76102	Sorghum	mitochondrion	22.67	16.12
OQU90457	Sorghum	cytosol, plastid	25.0	15.72
EES05524	Sorghum	plastid	22.53	15.7
EER92288	Sorghum	cytosol	24.85	15.41
OQU79278	Sorghum	cytosol, plastid	20.06	14.97
KXG29076	Sorghum	plastid	25.73	14.33

Protein Annotations

Gene3D:1.10.8.60	MapMan:13.3.6.5.5.1	Gene3D:3.40.50.300	UniProt:A0A1B6PCH4	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0045128
EnsemblPlants:KXG23422	ProteinID:KXG23422	ProteinID:KXG23422.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF17	SMART:SM00382	EnsemblPlantsGene:SORBI_3008G092800	SUPFAM:SSF52540
UniParc:UPI00081AD802	InterPro:Vps4_C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:41491257..41512661

Molecular Weight (calculated)

75908.1 Da

IEP (calculated)

6.729

GRAVY (calculated)

-0.495

Length

688 amino acids

Sequence
(BLAST)

001: MHRGIEHAPE MVEPPRVAGC STNWREEADE RLRRLHSLLF GADAALEHGD VMLAQALALR LLGFLDCQAL AAGAGPEDAA FVAPIRAAAS ARLAAASRAR
101: VPDSDRAAFE LARTDVGCVF AKQGDNNVER IQCSKYFQAL LQKAKANASE QLNATCQEFS VQWAPCVDES QADMENEKLS IRDSKLMLQT KLASLYSSKS
201: LKANGIPDRN MFETDNSSKE CAGVENRTSQ NGNQHPAYLD AEKDEKSRGQ LQNAKRKHAG FRSPICEVAN SPSSNDEADA PANEFTTAKR MMGMDVVHKS
301: VRSGLQGASV SPQCDNNHST RNYGVRPSWN SRRGPRGSFI PPIRNNGGSG TTISRVTGKN DESMEVSTRK CIDMLCGPDG ELPEKLRNLE SRLIEHVSNE
401: IMDRDPNVRW NDIAGLEHAK KCVTEMVIWP LLRPDIFRGC RSPGRGLLLF GPPGTGKTMI GKAIAGEAKA TFFYISASSL TSKWIGEGEK LVRALFGVAS
501: CRQPAVIFVD EIDSLLSQRK SDGEHESSRR LKTQFLIEME GFDTGNEQIL LIGATNRPQE LDEAARRRLT KRLYIPLPSS EARAWIIRNL LEKDGLFMLS
601: EEETSAICKL TEGYSGSDMK NLVKDASMGP LREALQRGVE ITKLSKEDMR PVMLKDFENA MQEVRPSVSS SELGTYEEWN MQFGSLSI

Best Arabidopsis Sequence Match ( AT3G27120.1 )
(BLAST)

001: MCGSVVSDSE REFEFHFWGF GHLGKEEERI MAGKRSSPFS SPLLRPPPEF LNVKEEGETE TPCWRKEVDE NLKRLQSLLF GADKFLEKSD FSSAQILGLR
101: LLGFLDSRSV TDADRDFIGP IRREVASKID LALEGLVSDS DRKAFELANT APGAIFGSKG GFDVEKIKQS KYFGFHVSQS NGKGVKEMEE RHDTDKLIPK
201: APKSMMQAKL TSLYGNSIGK PDNQRKTSVN NQDRASDECV IVERSHGFGF GTKRPHAETS SLANDGEVKE DGAPNGFVSA KIKLEMDVRQ KRGSTESPSS
301: CLSPQSDKNA LGRGYGSRSG GLRRGYRSNF VPPVKTNGNN VGNLTSRIGG KTDDALDDST RTCLEMLCGP DGELPEKLRN LEPRLIEHVS NEIMDRDPNV
401: RWDDIAGLEH AKKCVTEMVI WPLLRPDIFK GCRSPGKGLL LFGPPGTGKT MIGKAIAGEA KATFFYISAS SLTSKWIGEG EKLVRALFGV ASCRQPAVIF
501: VDEIDSLLSQ RKSDGEHESS RRLKTQFLIE MEGFDSGSEQ ILLIGATNRP QELDEAARRR LTKRLYIPLP SSEARAWIIQ NLLKKDGLFT LSDDDMNIIC
601: NLTEGYSGSD MKNLVKDATM GPLREALKRG IDITNLTKDD MRLVTLQDFK DALQEVRPSV SQNELGIYEN WNNQFGSLSL

Arabidopsis Description

FIGL1ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.