Factsheet for PGSC0003DMT400052226

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094100.2.1	Tomato	nucleus	96.86	96.86
VIT_14s0068g02130.t01	Wine grape	nucleus	72.16	72.16
KRH57680	Soybean	nucleus	66.32	67.22
KRG94255	Soybean	nucleus	65.57	66.46
CDY28494	Canola	plastid	64.22	66.2
Bra032982.1-P	Field mustard	plastid	63.77	65.74
CDY34176	Canola	plastid	63.77	65.74
GSMUA_Achr6P27610_001	Banana	cytosol	62.28	63.51
AT3G27120.1	Thale cress	nucleus	63.62	62.5
TraesCS5D01G123800.1	Wheat	nucleus	60.18	58.43
TraesCS5B01G110300.1	Wheat	nucleus	59.88	58.14
TraesCS5A01G109500.1	Wheat	nucleus	59.58	57.85
Zm00001d041083_P005	Maize	nucleus	57.34	56.49
KXG23422	Sorghum	nucleus	58.08	56.4
HORVU5Hr1G029910.10	Barley	cytosol, mitochondrion, nucleus	54.49	51.05
PGSC0003DMT400054532	Potato	cytosol	22.16	38.14
PGSC0003DMT400019113	Potato	cytosol	22.16	34.26
PGSC0003DMT400019119	Potato	cytosol	10.93	33.64
Os12t0443800-01	Rice	nucleus	19.01	33.25
PGSC0003DMT400071442	Potato	cytosol	16.02	32.82
PGSC0003DMT400050194	Potato	cytosol	20.81	31.95
PGSC0003DMT400042654	Potato	cytosol	24.25	31.27
PGSC0003DMT400031598	Potato	endoplasmic reticulum	16.32	30.36
PGSC0003DMT400047633	Potato	endoplasmic reticulum	17.07	30.16
PGSC0003DMT400013963	Potato	endoplasmic reticulum	16.92	28.83
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	25.45	20.38
PGSC0003DMT400051401	Potato	endoplasmic reticulum	24.55	19.76

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102603889	MapMan:13.3.6.5.5.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0045128
UniProt:M1BT12	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	EnsemblPlantsGene:PGSC0003DMG400020257	PGSC:PGSC0003DMG400020257
EnsemblPlants:PGSC0003DMT400052226	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF17	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0002951A24	InterPro:Vps4_C	RefSeq:XP_006338693.2	RefSeq:XP_015163210.1	RefSeq:XP_015163217.1	SEG:seg

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020257]

Coordinates

chr2:+:47948853..47955797

Molecular Weight (calculated)

74266.9 Da

IEP (calculated)

7.780

GRAVY (calculated)

-0.603

Length

668 amino acids

Sequence
(BLAST)

001: MAGKEDSSKN TAPNSKSEKM EDEKSEVSWR KEVDTNLKRL HSMLFGADVA LKSKDFSSAT VLGLGLIGFL DSHSHSEVDE AFIRPIRREA LSNFDSARSS
101: LITESDRHAF EQAGRDPGCI FAQGKNIDIE KIKQSKYFLS LCQQHEDTAK GEQGNQLNRH ANVGSRTLKT PAHTSPRDFS LIKNRSLAND SSPEILPVDR
201: FHSKHSYPKH QTVDIKDGEE ERTCVNGSKT RRLYMESSGS RDENISSPLC TEEADVDASP NGFVTARAKL EMDTRHKRGL SRSPSASISP QNDNTLVNKG
301: CGVRSYGFPR RGIRGNFVPP IRGSSGNNVG NVTSRTSGKG EDTLDDSTRR CLEMLIGPDG ELPEKLRNIE PRLIEHISNE IMHRDPNVRW NDIAGLEHAK
401: KCVTEMVIWP LLRPDIFKGC RSPGRGLLLF GPPGTGKTMI GKAIAGEAKA TFFYISASSL TSKWIGEGEK LVRALFGVAS CRQPAVIFVD EIDSLLSQRK
501: SEGEHESSRR LKTQFLIEME GFDNVSEQIL LIGATNRPQE LDEAARRRLT KRLYVPLPSS EARAWIAKSL LEKDGLFKLS DDDIVSICKF TEGYSGSDMK
601: NLVKDASMGP LREALRHGIE ITKLKKEDMR PVTLQDFESA LQEVRPSVSL NELGAYEDWN KQFGSLAL

Best Arabidopsis Sequence Match ( AT3G27120.1 )
(BLAST)

001: MCGSVVSDSE REFEFHFWGF GHLGKEEERI MAGKRSSPFS SPLLRPPPEF LNVKEEGETE TPCWRKEVDE NLKRLQSLLF GADKFLEKSD FSSAQILGLR
101: LLGFLDSRSV TDADRDFIGP IRREVASKID LALEGLVSDS DRKAFELANT APGAIFGSKG GFDVEKIKQS KYFGFHVSQS NGKGVKEMEE RHDTDKLIPK
201: APKSMMQAKL TSLYGNSIGK PDNQRKTSVN NQDRASDECV IVERSHGFGF GTKRPHAETS SLANDGEVKE DGAPNGFVSA KIKLEMDVRQ KRGSTESPSS
301: CLSPQSDKNA LGRGYGSRSG GLRRGYRSNF VPPVKTNGNN VGNLTSRIGG KTDDALDDST RTCLEMLCGP DGELPEKLRN LEPRLIEHVS NEIMDRDPNV
401: RWDDIAGLEH AKKCVTEMVI WPLLRPDIFK GCRSPGKGLL LFGPPGTGKT MIGKAIAGEA KATFFYISAS SLTSKWIGEG EKLVRALFGV ASCRQPAVIF
501: VDEIDSLLSQ RKSDGEHESS RRLKTQFLIE MEGFDSGSEQ ILLIGATNRP QELDEAARRR LTKRLYIPLP SSEARAWIIQ NLLKKDGLFT LSDDDMNIIC
601: NLTEGYSGSD MKNLVKDATM GPLREALKRG IDITNLTKDD MRLVTLQDFK DALQEVRPSV SQNELGIYEN WNNQFGSLSL

Arabidopsis Description

FIGL1ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.