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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 4
  • nucleus 1
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g082630.2.1 Tomato endoplasmic reticulum 94.44 94.69
PGSC0003DMT400013963 Potato endoplasmic reticulum 85.45 82.4
KRH53570 Soybean endoplasmic reticulum, plasma membrane 82.01 79.08
KRH64362 Soybean endoplasmic reticulum, plasma membrane 81.75 78.83
KRH15897 Soybean endoplasmic reticulum 78.84 76.41
CDY71574 Canola endoplasmic reticulum, plasma membrane 78.04 75.26
CDX92836 Canola endoplasmic reticulum, plasma membrane 77.78 75.19
CDY29857 Canola endoplasmic reticulum, plasma membrane 77.78 75.19
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 79.1 75.13
GSMUA_Achr11P... Banana endoplasmic reticulum 76.98 75.0
Bra019030.1-P Field mustard endoplasmic reticulum, plasma membrane 77.78 75.0
CDY30236 Canola endoplasmic reticulum 77.51 74.74
Bra026316.1-P Field mustard endoplasmic reticulum 77.51 74.74
CDY55344 Canola endoplasmic reticulum 77.51 74.74
CDY19035 Canola endoplasmic reticulum 77.25 74.49
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 75.93 73.97
AT5G53540.1 Thale cress endoplasmic reticulum 78.31 73.45
CDY14372 Canola endoplasmic reticulum 76.98 73.3
Bra003048.1-P Field mustard endoplasmic reticulum 76.72 73.05
CDY20251 Canola endoplasmic reticulum 76.72 72.14
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 70.9 72.04
Os06t0714500-01 Rice plasma membrane 74.87 72.01
PGSC0003DMT400031598 Potato endoplasmic reticulum 68.25 71.87
TraesCS7B01G287800.1 Wheat golgi 70.9 71.85
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 70.9 71.85
Zm00001d014775_P002 Maize plastid 74.07 71.61
KXG20883 Sorghum endoplasmic reticulum 73.28 70.84
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 73.55 70.56
CDY38752 Canola endoplasmic reticulum 71.69 70.21
CDY47077 Canola endoplasmic reticulum, plasma membrane 70.11 68.12
Bra029063.1-P Field mustard endoplasmic reticulum 69.84 67.52
HORVU7Hr1G091480.2 Barley plastid 73.02 63.89
Zm00001d036410_P002 Maize plastid 71.96 57.14
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 79.37 38.86
PGSC0003DMT400054532 Potato cytosol 27.78 27.06
PGSC0003DMT400071442 Potato cytosol 22.75 26.38
PGSC0003DMT400019119 Potato cytosol 14.81 25.81
PGSC0003DMT400050194 Potato cytosol 28.31 24.6
PGSC0003DMT400019113 Potato cytosol 28.04 24.54
PGSC0003DMT400042654 Potato cytosol 29.37 21.43
PGSC0003DMT400031731 Potato cytosol, endoplasmic reticulum 41.01 18.59
PGSC0003DMT400051401 Potato endoplasmic reticulum 40.48 18.43
PGSC0003DMT400052226 Potato nucleus 30.16 17.07
Protein Annotations
Gene3D:1.10.8.60EntrezGene:102587931Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_coreGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524UniProt:M1BL52
InterPro:P-loop_NTPasePFAM:PF00004EnsemblPlantsGene:PGSC0003DMG400018513PGSC:PGSC0003DMG400018513EnsemblPlants:PGSC0003DMT400047633ScanProsite:PS00674
PANTHER:PTHR23074PANTHER:PTHR23074:SF20SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0002968153
RefSeq:XP_006350497.2SEG:seg::::
Description
26S proteasome regulatory particle chain RPT6 [Source:PGSC_GENE;Acc:PGSC0003DMG400018513]
Coordinates
chr3:+:47879752..47886176
Molecular Weight (calculated)
41961.8 Da
IEP (calculated)
8.080
GRAVY (calculated)
-0.209
Length
378 amino acids
Sequence
(BLAST)
001: MKKRRSSETK LLKELLLYAA SAALSSLVLF VGLRQLDPNR QASKKALEHK KELAKRLGRP IIQTNSYEDV IACDVINPDH IDVEFDSIGG LESIKQALFE
101: LVILPLRRPE LFHGKLLGPQ KGVLLYGPPG TGKTMLAKAI AKESSAVFIN VRTSNLMSKW FGDAQKLVAA VFSLAHKLQP AIIFIDEVDS FLGQRKSTDN
201: EASTNMKTEF MALWDGFTTD QNARVMVLAA TNRPSELDEA ILRRLPQAFE IGMPDHRERT EILKVILRGE KVEGNIDYDG IASLCDGYTG SDLLELCKKA
301: AYFPIRELLN DEKSGKLTAE PRPLLELDLE KALAMSKKTK VAASEYSRLS SRHADSDSAI NEISKLVVSH ILNLQSDN
Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.